Analyzing high-throughput assay data to advance the rapid screening of environmental chemicals for human reproductive toxicity.

bioRxiv

University of California, San Francisco (UCSF), Program on Reproductive Health and the Environment, Department of Obstetrics, Gynecology and Reproductive Sciences, San Francisco, CA, USA.

Published: May 2024

AI Article Synopsis

  • Scientists are studying how certain chemicals can harm reproduction, but there aren't many quick tests to check this yet.
  • They looked at how well tests using yeast and tiny worms could find toxic chemicals and compared their results with a database of mammal data.
  • The tests showed good agreement in identifying harmful substances, suggesting these tests could help quickly find chemicals that affect reproduction in the future.

Article Abstract

While high-throughput (HTP) assays have been proposed as platforms to rapidly assess reproductive toxicity, there is currently a lack of established assays that specifically address germline development/function and fertility. We assessed the applicability domains of yeast ( and nematode HTP assays in toxicity screening of 124 environmental chemicals, determining their agreement in identifying toxicants and their concordance with reproductive toxicity . We integrated data generated in the two models and compared results using a streamlined, semi-automated benchmark dose (BMD) modeling approach. We then extracted and modeled relevant mammalian data available for the matching chemicals included in the Toxicological Reference Database (ToxRefDB). We ranked potencies of common compounds using the BMD and evaluated correlation between the datasets using Pearson and Spearman correlation coefficients. We found moderate to good correlation across the three data sets, with r = 0.48 (95% CI: 0.28-1.00, p<0.001) and r = 0.40 (p=0.002) for the parametric and rank order correlations between the HTP BMDs; r = 0.95 (95% CI: 0.76-1.00, p=0.0005) and r = 0.89 (p=0.006) between the yeast assay and ToxRefDB BMDs; and r = 0.81 (95% CI: 0.28-1.00, p=0.014) and r = 0.75 (p=0.033) between the worm assay and ToxRefDB BMDs. Our findings underscore the potential of these HTP assays to identify environmental chemicals that exhibit reproductive toxicity. Integrating these HTP datasets into mammalian prediction models using machine learning methods could further enhance the predictive value of these assays in future rapid screening efforts.

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Source
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC11142090PMC
http://dx.doi.org/10.1101/2024.05.21.595187DOI Listing

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