sp. nov. sp. nov. and sp. nov., three psychrophilic bacteria isolated from deep-sea sediment.

Int J Syst Evol Microbiol

Laboratory of Deep-Sea Microbial Cell Biology, Institute of Deep-sea Science and Engineering, Chinese Academy of Sciences, Sanya, Hainan, PR China.

Published: May 2024

AI Article Synopsis

  • Three psychrophilic bacteria strains (SQ149, SQ345, and S1-1) were isolated from deep-sea sediments in the South China Sea and showed high similarity to strain RZG4-3-1 based on 16S rRNA gene sequences (96.45 to 96.67%).
  • Phylogenetic and genetic analyses indicated that these strains form a distinct cluster and represent novel species, as their genetic markers fall below the species delimitation thresholds.
  • All strains are Gram-negative, rod-shaped, and contain specific fatty acids, respiratory quinones, and polar lipids, leading to their classification as new species within the genus, with proposed names for each strain.

Article Abstract

Three psychrophilic bacteria, designated as strains SQ149, SQ345, and S1-1, were isolated from deep-sea sediment from the South China Sea. All three strains were the most closely related to RZG4-3-1 based on the 16S rRNA gene sequence analysis (similarity ranged from 96.45 to 96.67 %). Phylogenetic analysis based on the 16S rRNA gene and core-genome sequences showed that three strains formed a cluster within the genus . The average amino acid identity, average nucleotide identity, and digital DNA-DNA hybridization values among the three strains and closest species were far below the cut-off value recommended for delineating species, indicating they each represented a novel species. All three strains were Gram-stain-negative, rod-shaped, and contained summed feature 3 (C ω7 and/or C ω6) as the predominant fatty acid, Q-8 as the major respiratory quinone, and phosphatidylethanolamine and phosphatidylglycerol as predominant polar lipids. Based on the genomic, phylogenetic, and phenotypic characterizations, each strain is considered to represent a novel species within the genus , for which the names sp. nov. (type strain SQ149=MCCC 1K04231=JCM 33807), sp. nov. (type strain SQ345=MCCC 1K04232=JCM 33808), and sp. nov. (type strain S1-1=MCCC 1K06879=JCM 34824) are proposed.

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Source
http://dx.doi.org/10.1099/ijsem.0.006399DOI Listing

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