GateView: A Multi-Omics Platform for Gene Feature Analysis of Virus Receptors within Human Normal Tissues and Tumors.

Biomolecules

MOE Key Laboratory of Gene Function and Regulation, State Key Laboratory for Biocontrol, School of Life Sciences, Sun Yat-sen University, Guangzhou 510275, China.

Published: April 2024

AI Article Synopsis

  • Viruses need to attach to specific cell surface receptors to invade host cells, but many of these receptors are still unidentified, making research challenging.
  • This study analyzed known human viruses and their receptors using bioinformatics to understand the characteristics that make some membrane proteins more likely to act as virus receptors.
  • Findings showed that virus receptors generally have higher expression levels and lower sequence conservation than other membrane proteins, with notable variations in expression due to age and significant dysregulation in tumors, leading to the development of GateView, a platform for further virus receptor research.

Article Abstract

Viruses are obligate intracellular parasites that rely on cell surface receptor molecules to complete the first step of invading host cells. The experimental method for virus receptor screening is time-consuming, and receptor molecules have been identified for less than half of known viruses. This study collected known human viruses and their receptor molecules. Through bioinformatics analysis, common characteristics of virus receptor molecules (including sequence, expression, mutation, etc.) were obtained to study why these membrane proteins are more likely to become virus receptors. An in-depth analysis of the cataloged virus receptors revealed several noteworthy findings. Compared to other membrane proteins, human virus receptors generally exhibited higher expression levels and lower sequence conservation. These receptors were found in multiple tissues, with certain tissues and cell types displaying significantly higher expression levels. While most receptor molecules showed noticeable age-related variations in expression across different tissues, only a limited number of them exhibited gender-related differences in specific tissues. Interestingly, in contrast to normal tissues, virus receptors showed significant dysregulation in various types of tumors, particularly those associated with dsRNA and retrovirus receptors. Finally, GateView, a multi-omics platform, was established to analyze the gene features of virus receptors in human normal tissues and tumors. Serving as a valuable resource, it enables the exploration of common patterns among virus receptors and the investigation of virus tropism across different tissues, population preferences, virus pathogenicity, and oncolytic virus mechanisms.

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Source
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC11118183PMC
http://dx.doi.org/10.3390/biom14050516DOI Listing

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