Contrast transport models are widely used to quantify blood flow and transport in dynamic contrast-enhanced magnetic resonance imaging. These models analyze the time course of the contrast agent concentration, providing diagnostic and prognostic value for many biological systems. Thus, ensuring accuracy and repeatability of the model parameter estimation is a fundamental concern. In this work, we analyze the structural and practical identifiability of a class of nested compartment models pervasively used in analysis of MRI data. We combine artificial and real data to study the role of noise in model parameter estimation. We observe that although all the models are structurally identifiable, practical identifiability strongly depends on the data characteristics. We analyze the impact of increasing data noise on parameter identifiability and show how the latter can be recovered with increased data quality. To complete the analysis, we show that the results do not depend on specific tissue characteristics or the type of enhancement patterns of contrast agent signal.
Download full-text PDF |
Source |
---|---|
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC11132485 | PMC |
http://dx.doi.org/10.1371/journal.pcbi.1012106 | DOI Listing |
Practical identifiability is a critical concern in data-driven modeling of mathematical systems. In this paper, we propose a novel framework for practical identifiability analysis to evaluate parameter identifiability in mathematical models of biological systems. Starting with a rigorous mathematical definition of practical identifiability, we demonstrate its equivalence to the invertibility of the Fisher Information Matrix.
View Article and Find Full Text PDFMath Biosci Eng
October 2024
Department of Mathematics, Virginia Polytechnic Institute and State University, Blacksburg, VA, USA.
Uncertainty in parameter estimates from fitting within-host models to empirical data limits the model's ability to uncover mechanisms of infection, disease progression, and to guide pharmaceutical interventions. Understanding the effect of model structure and data availability on model predictions is important for informing model development and experimental design. To address sources of uncertainty in parameter estimation, we used four mathematical models of influenza A infection with increased degrees of biological realism.
View Article and Find Full Text PDFEvol Hum Sci
September 2024
Victoria University of Wellington, Wellington, New Zealand.
Causal inference requires contrasting counterfactual states under specified interventions. Obtaining these contrasts from data depends on explicit assumptions and careful, multi-step workflows. Causal diagrams are crucial for clarifying the identifiability of counterfactual contrasts from data.
View Article and Find Full Text PDFEnviron Res
January 2025
School of Mathematics and Computing (Computational Science and Engineering), Yonsei University, Seoul 03722, Republic of Korea. Electronic address:
Monitoring airborne nanoparticles has a vital role in indoor air quality control due to their hazardous effects on human health. Detecting particles becomes more challenging as their sizes decrease. While research-grade instruments like the scanning mobility particle sizer (SMPS) can provide detailed and useful information, they are not practical for personal use due to their size and cost.
View Article and Find Full Text PDFAlzheimers Dement (Amst)
November 2024
Introduction: We evaluated short versions of a 16-item odor identification (OID) test, with regard to their ability to identify individuals at high dementia risk.
Methods: Participants from the population-based SNAC-K study ( = 2418) were followed across 12 years. We formed 13 abbreviated clusters based on the identifiability and perceptual characteristics of the Sniffin' Sticks Test (SST) items, and pre-existing test versions.
Enter search terms and have AI summaries delivered each week - change queries or unsubscribe any time!