A PHP Error was encountered

Severity: Warning

Message: file_get_contents(https://...@pubfacts.com&api_key=b8daa3ad693db53b1410957c26c9a51b4908&a=1): Failed to open stream: HTTP request failed! HTTP/1.1 429 Too Many Requests

Filename: helpers/my_audit_helper.php

Line Number: 176

Backtrace:

File: /var/www/html/application/helpers/my_audit_helper.php
Line: 176
Function: file_get_contents

File: /var/www/html/application/helpers/my_audit_helper.php
Line: 250
Function: simplexml_load_file_from_url

File: /var/www/html/application/helpers/my_audit_helper.php
Line: 1034
Function: getPubMedXML

File: /var/www/html/application/helpers/my_audit_helper.php
Line: 3152
Function: GetPubMedArticleOutput_2016

File: /var/www/html/application/controllers/Detail.php
Line: 575
Function: pubMedSearch_Global

File: /var/www/html/application/controllers/Detail.php
Line: 489
Function: pubMedGetRelatedKeyword

File: /var/www/html/index.php
Line: 316
Function: require_once

Constructing and sampling partite, 3-uniform hypergraphs with given degree sequence. | LitMetric

Partite, 3-uniform hypergraphs are 3-uniform hypergraphs in which each hyperedge contains exactly one point from each of the 3 disjoint vertex classes. We consider the degree sequence problem of partite, 3-uniform hypergraphs, that is, to decide if such a hypergraph with prescribed degree sequences exists. We prove that this decision problem is NP-complete in general, and give a polynomial running time algorithm for third almost-regular degree sequences, that is, when each degree in one of the vertex classes is k or k - 1 for some fixed k, and there is no restriction for the other two vertex classes. We also consider the sampling problem, that is, to uniformly sample partite, 3-uniform hypergraphs with prescribed degree sequences. We propose a Parallel Tempering method, where the hypothetical energy of the hypergraphs measures the deviation from the prescribed degree sequence. The method has been implemented and tested on synthetic and real data. It can also be applied for χ2 testing of contingency tables. We have shown that this hypergraph-based χ2 test is more sensitive than the standard χ2 test. The extra sensitivity is especially advantageous on small data sets, where the proposed Parallel Tempering method shows promising performance.

Download full-text PDF

Source
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC11095770PMC
http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0303155PLOS

Publication Analysis

Top Keywords

3-uniform hypergraphs
20
partite 3-uniform
16
degree sequence
12
vertex classes
12
prescribed degree
12
degree sequences
12
classes consider
8
parallel tempering
8
tempering method
8
χ2 test
8

Similar Publications

Want AI Summaries of new PubMed Abstracts delivered to your In-box?

Enter search terms and have AI summaries delivered each week - change queries or unsubscribe any time!