We consider bipartite tight-binding graphs composed by N nodes split into two sets of equal size: one set containing nodes with on-site loss, the other set having nodes with on-site gain. The nodes are connected randomly with probability p. Specifically, we measure the connectivity between the two sets with the parameter α, which is the ratio of current adjacent pairs over the total number of possible adjacent pairs between the sets. For general undirected-graph setups, the non-Hermitian Hamiltonian H(γ,α,N) of this model presents pseudo-Hermiticity, where γ is the loss/gain strength. However, we show that for a given graph setup H(γ,α,N) becomes PT-symmetric. In both scenarios (pseudo-Hermiticity and PT-symmetric), depending on the parameter combination, the spectra of H(γ,α,N) can be real even when it is non-Hermitian. Then we demonstrate, for both setups, that there is a well-defined sector of the γα-plane (which grows with N) where the spectrum of H(γ,α,N) is predominantly real.
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Chaos
May 2024
Laboratoire Charles Fabry, Institut d'Optique Graduate School, CNRS, Université Paris Saclay, 2 Av. Augustin Fresnel, 91127 Palaiseau Cedex, France.
We consider bipartite tight-binding graphs composed by N nodes split into two sets of equal size: one set containing nodes with on-site loss, the other set having nodes with on-site gain. The nodes are connected randomly with probability p. Specifically, we measure the connectivity between the two sets with the parameter α, which is the ratio of current adjacent pairs over the total number of possible adjacent pairs between the sets.
View Article and Find Full Text PDFJ Phys Condens Matter
November 2023
Department of Electrical and Electronic Engineering, Graduate School of Engineering, Kobe University, Nada, Kobe 657-8501 Japan.
Valleytronics, which makes use of the two valleys in graphenes, attracts considerable attention and a valley filter is expected to be the central component in valleytronics. We propose the application of the graphene valley filter using blister defects to the investigation of the valley-dependent transport properties of the Stone-Wales and blister defects of graphenes by density functional theory calculations. It is found that the intervalley transition from thevalley to theK'valleys is completely suppressed in some defects.
View Article and Find Full Text PDFJ Chem Phys
July 2023
College of Chemistry and Molecular Engineering, Peking University, Beijing 100871, China.
Dirac cones are difficult to achieve in a square lattice with full symmetry. Here, we have theoretically investigated a bipartite tetragonal lattice composed of tetragons and octagons using both Tight-Binding (TB) model and density functional theory (DFT) calculations. The TB model predicts that the system exhibits nodal line semi-metallic properties when the on-site energies of all atoms are identical.
View Article and Find Full Text PDFJ Chem Phys
October 2020
National Institute of Science Education and Research, Homi Bhaba National Institute, Jatni 752050, Odisha, India.
We demonstrate in this work the transferability of self-energy (SE) correction (SEC) of Kohn-Sham (KS) single particle states from smaller to larger systems, when mapped through localized orbitals constructed from the KS states. The approach results in a SE corrected TB framework within which the mapping of SEC of TB parameters is found to be transferable from smaller to larger systems of similar morphology, leading to a computationally inexpensive approach for the estimation of SEC in large systems with reasonably high accuracy. The scheme has been demonstrated in insulating, semiconducting, and magnetic nanoribbons of graphene and hexagonal boron nitride, where the SEC tends to strengthen the individual π bonds, leading to transfer of charges from the edge to bulk.
View Article and Find Full Text PDFStructure
January 2020
Department of Pharmacology, University of Colorado School of Medicine, Aurora, CO 80045, USA. Electronic address:
The assembly of human histone acetyltransferase MOZ/MORF complexes relies on the scaffolding bromodomain plant homeodomain (PHD) finger 1 (BRPF1) subunit. The PHD-zinc-knuckle-PHD module of BRPF1 (BRPF1) has been shown to associate with the histone H3 tail and DNA; however, the molecular mechanism underlying recognition of H3 and the relationship between the histone and DNA-binding activities remain unclear. In this study, we report the crystal structure of BRPF1 bound to the H3 tail and characterize the role of the bipartite interaction in the engagement of BRPF1 with the nucleosome core particle (NCP).
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