PlasCAT: Plasmid Cloud Assembly Tool.

Bioinformatics

GenoFAB, Inc., Fort Collins, CO 80528, United States.

Published: May 2024

Summary: PlasCAT (Plasmid Cloud Assembly Tool) is an easy-to-use cloud-based bioinformatics tool that enables de novo plasmid sequence assembly from raw sequencing data. Nontechnical users can now assemble sequences from long reads and short reads without ever touching a line of code. PlasCAT uses high-performance computing servers to reduce run times on assemblies and deliver results faster.

Availability And Implementation: PlasCAT is freely available on the web at https://sequencing.genofab.com. The assembly pipeline source code and server code are available for download at https://bitbucket.org/genofabinc/workspace/projects/PLASCAT. Click the Cancel button to access the source code without authenticating. Web servers implemented in React.js and Python, with all major browsers supported.

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Source
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC11101281PMC
http://dx.doi.org/10.1093/bioinformatics/btae299DOI Listing

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