Common buckwheat ( Moench) seeds contain 13S globulin, the zero-repeat subunit of which is trypsin-resistant and allergenic. Here, its two novel alleles were analyzed for development of hypoallergenic plants. The allele has a Miniature Inverted-repeat Transposable Element (MITE)-like insertion in the 4th exon. However, most of the insertion was spliced-out, resulting in accumulation of zero-repeat subunit in homozygotes. Meanwhile, the has a 164-bp insertion in the 3rd exon, resulting in no accumulation of zero-repeat subunit in homozygotes (NB2_homo). Both the insertion sequences were predicted to form a hairpin-like structure, and that of was more rigid than that of . Trypsin digestion in NB2_homo showed that the α polypeptide of Met-rich subunit is also hard to digest, that is a next target to eliminate for hypoallergenic buckwheat development.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC11061244PMC
http://dx.doi.org/10.1016/j.fochms.2024.100205DOI Listing

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Common buckwheat ( Moench) seeds contain 13S globulin, the zero-repeat subunit of which is trypsin-resistant and allergenic. Here, its two novel alleles were analyzed for development of hypoallergenic plants. The allele has a Miniature Inverted-repeat Transposable Element (MITE)-like insertion in the 4th exon.

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The 13S globulin zero-repeat subunit is resistant to trypsin and may have higher allergenicity than the 1-6 tandem repeat subunits in common buckwheat ( Moench). To explore alleles useful for lowering allergenicity, amplicon deep sequencing targeting the zero-repeat subunit gene was conducted in bulked genomic DNA from eight cultivars and landraces. The analysis identified a unique allele encoding a zero-repeat subunit with 10 amino acid insertion (10aa) at a position equivalent to the tandem repeat insertion.

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The zero-repeat subunit of 13S globulin, which lacks tandem repeat inserts, is trypsin-resistant and suggested to show higher allergenicity than the other subunits in common buckwheat ( Moench). To evaluate allelic variations and find novel alleles, the diversity of the zero-repeat genes was examined for two Japanese elite cultivars and 15 Pakistani landraces. The results demonstrated that two new alleles and , plus three additional new alleles , , and , were identified besides the already-known , , and alleles.

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