An efficient algorithm for compressing a given many-body potential energy surface (PES) of molecular systems into a grid-based matrix product operator (MPO) is proposed. The PES is once represented by a full-dimensional or truncated many-body expansion form, which is obtained by ab initio calculations at each grid mesh point, and then all terms in the expansion are compressed and merged into a single MPO while maintaining the bond dimension of the MPO as small as possible. It was shown that the ab initio PES of the HCO was compressed by more than 2 orders of magnitude in the size of the site operators without loss of accuracy. By the use of grid basis, the tensor rank of the site operators of the MPO is reduced from four to three due to the diagonal nature of the position-dependent operators on grid basis, which significantly reduces the computational cost of the tensor contractions required in the real and imaginary time evolution of the matrix product state (MPS) wave functions with the grid-based MPO (Grid-MPO) Hamiltonian. Similar to other grid-based methods, Grid-MPO is easily applicable to any kinds of potentials of molecular systems, such as analytical empirical model potentials expressed by position operators and ab initio potentials, if the values at the grid points are available. Using the Grid-MPO combined with the MPS, we calculated the time correlation function of the Eigen cation to predict the infrared spectrum and compared with the experimental and the previous theoretical studies. The actual scaling with the size of systems was examined for the multidimensional Henon-Heiles Hamiltonian. It was shown that the method is considerably accelerated by the graphic processing unit (GPU) because the sizes of site operators were kept small and all tensors were able to be stored on the VRAM of a GPU.
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http://dx.doi.org/10.1021/acs.jctc.4c00046 | DOI Listing |
Front Biosci (Landmark Ed)
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Department of Chemistry Education, Kongju National University, 32588 Gongju, Chungcheongnam-do, Republic of Korea.
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Institute of Graduate Studies, Bioengineering Division, Tokat Gaziosmanpaşa University, 60250 Tokat, Türkiye.
Hernia repair is the most common surgical operation applied worldwide. Mesh prostheses are used to support weakened or damaged tissue to decrease the risk of hernia recurrence. However, the patches currently used in clinic applications have significant short-term and long-term risks.
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January 2025
Departamento de Ciencias Preclínicas, Facultad de Medicina, Universidad de La Frontera, Temuco 4811230, Chile.
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