The 'structure assessment' web server is a one-stop shop for interactive evaluation and benchmarking of structural models of macromolecular complexes including proteins and nucleic acids. A user-friendly web dashboard links sequence with structure information and results from a variety of state-of-the-art tools, which facilitates the visual exploration and evaluation of structure models. The dashboard integrates stereochemistry information, secondary structure information, global and local model quality assessment of the tertiary structure of comparative protein models, as well as prediction of membrane location. In addition, a benchmarking mode is available where a model can be compared to a reference structure, providing easy access to scores that have been used in recent CASP experiments and CAMEO. The structure assessment web server is available at https://swissmodel.expasy.org/assess.

Download full-text PDF

Source
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC11223858PMC
http://dx.doi.org/10.1093/nar/gkae270DOI Listing

Publication Analysis

Top Keywords

web server
12
structure assessment
8
assessment web
8
structure
7
web
4
server proteins
4
proteins complexes
4
complexes 'structure
4
'structure assessment'
4
assessment' web
4

Similar Publications

Want AI Summaries of new PubMed Abstracts delivered to your In-box?

Enter search terms and have AI summaries delivered each week - change queries or unsubscribe any time!