genome reveals the evolutionary origin of crocin biosynthesis.

Acta Pharm Sin B

Key Lab of Chinese Medicine Resources Conservation, State Administration of Traditional Chinese Medicine of the People's Republic of China, Institute of Medicinal Plant Development, Chinese Academy of Medical Sciences & Peking Union Medical College, Beijing 100193, China.

Published: April 2024

(saffron) is a globally autumn-flowering plant, and its stigmas are the most expensive spice and valuable herb medicine. specialized metabolites, crocins, are biosynthesized in distant species, (eudicot) and (monocot), and the evolution of crocin biosynthesis remains poorly understood. With the chromosome-level genome assembly, we revealed that two rounds of lineage-specific whole genome triplication occurred, contributing important roles in the production of carotenoids and apocarotenoids. According to the kingdom-wide identification, phylogenetic analysis, and functional assays of carotenoid cleavage dioxygenases (CCDs), we deduced that the duplication, site positive selection, and neofunctionalization of -specific CCD2 from CCD1 members are responsible for the crocin biosynthesis. In addition, site mutation of CsCCD2 revealed the key amino acids, including I143, L146, R161, E181, T259, and S292 related to the catalytic activity of zeaxanthin cleavage. Our study provides important insights into the origin and evolution of plant specialized metabolites, which are derived by duplication events of biosynthetic genes.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC10985130PMC
http://dx.doi.org/10.1016/j.apsb.2023.12.013DOI Listing

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