Genomic Characterization of a Carbapenem-Resistant Strain Co-Harboring and Genes.

Infect Drug Resist

Department of Clinical Laboratory, Sir Run Run Shaw Hospital, Zhejiang University School of Medicine, Hangzhou, People's Republic of China.

Published: March 2024

is an emerging bacterial pathogen responsible for causing infections in both humans and animals. Unfortunately, sporadic reports of carbapenem-resistant (CRRP) have been documented worldwide. Here we first reported the complete genome sequence of a CRRP isolate RP_3045 co-carrying and , recovered from a patient in China, and its genetic relatedness to 82 strains deposited in the NCBI GenBank database, sourced from humans, animals, and the environment. Whole-genome sequencing was performed using the Illumina NovaSeq 6000 and Oxford Nanopore MinION platforms. Phylogenetic analysis was also performed and visualized using a single nucleotide polymorphism (SNP)-based strategy. The complete genome of strain RP_3045 was determined to be 6,312,961 bp in length, comprising five contigs that included one chromosome and four plasmids. RP_3045 was found to be multidrug-resistant and harbored several antimicrobial resistance genes, including both and genes located on a single plasmid. The most closely related strain was hkcpe63, recovered from humans in Hong Kong, China, in 2014, with 506 SNP differences. strains were distributed globally and exhibited strong associations among isolates obtained from different sectors. This study provides evidence for the potential of to disseminate carbapenem resistance across different sectors, highlighting the critical need for active and continuous surveillance of CRRP.

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Source
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC10981896PMC
http://dx.doi.org/10.2147/IDR.S459649DOI Listing

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