A PHP Error was encountered

Severity: Warning

Message: fopen(/var/lib/php/sessions/ci_session7vfojof3ifuqbinmbflnrd2t2jci5b6l): Failed to open stream: No space left on device

Filename: drivers/Session_files_driver.php

Line Number: 177

Backtrace:

File: /var/www/html/index.php
Line: 316
Function: require_once

A PHP Error was encountered

Severity: Warning

Message: session_start(): Failed to read session data: user (path: /var/lib/php/sessions)

Filename: Session/Session.php

Line Number: 137

Backtrace:

File: /var/www/html/index.php
Line: 316
Function: require_once

A PHP Error was encountered

Severity: Warning

Message: file_get_contents(https://...@gmail.com&api_key=61f08fa0b96a73de8c900d749fcb997acc09): Failed to open stream: HTTP request failed! HTTP/1.1 429 Too Many Requests

Filename: helpers/my_audit_helper.php

Line Number: 143

Backtrace:

File: /var/www/html/application/helpers/my_audit_helper.php
Line: 143
Function: file_get_contents

File: /var/www/html/application/helpers/my_audit_helper.php
Line: 209
Function: simplexml_load_file_from_url

File: /var/www/html/application/helpers/my_audit_helper.php
Line: 3098
Function: getPubMedXML

File: /var/www/html/application/controllers/Detail.php
Line: 574
Function: pubMedSearch_Global

File: /var/www/html/application/controllers/Detail.php
Line: 488
Function: pubMedGetRelatedKeyword

File: /var/www/html/index.php
Line: 316
Function: require_once

A PHP Error was encountered

Severity: Warning

Message: Attempt to read property "Count" on bool

Filename: helpers/my_audit_helper.php

Line Number: 3100

Backtrace:

File: /var/www/html/application/helpers/my_audit_helper.php
Line: 3100
Function: _error_handler

File: /var/www/html/application/controllers/Detail.php
Line: 574
Function: pubMedSearch_Global

File: /var/www/html/application/controllers/Detail.php
Line: 488
Function: pubMedGetRelatedKeyword

File: /var/www/html/index.php
Line: 316
Function: require_once

Does Inter-Residue Hydrogen Bonding in β-(1→4)-Linked Disaccharides Influence Linkage Conformation in Aqueous Solution? | LitMetric

AI Article Synopsis

  • Two disaccharides were synthesized to analyze the effects of selective C-enrichment and measure specific trans-glycosidic couplings using density functional theory (DFT).
  • The study found that the deoxygenation at C3 of one disaccharide has minimal impact on the mean torsion angles and librational motions, suggesting that inter-residue hydrogen bonding has a limited role in determining the linkage conformation.
  • Additionally, molecular dynamics simulations indicated that the deoxydisaccharide has more conformational flexibility, allowing for a wider sampling of states, but the dominant conformation remains largely unchanged between the two disaccharides.

Article Abstract

Two disaccharides, methyl β-d-galactopyranosyl-(1→4)-α-d-glucopyranoside () and methyl β-d-galactopyranosyl-(1→4)-3-deoxy-α-d--hexopyranoside (), were prepared with selective C-enrichment to allow measurement of six trans--glycosidic -couplings (, , and ) in each compound. Density functional theory (DFT) was used to parameterize Karplus-like equations that relate these -couplings to either or . analysis was applied to both linkages to determine mean values of and in each disaccharide and their associated circular standard deviations (CSDs). Results show that deoxygenation at C3 of has little effect on both the mean values and librational motions of the linkage torsion angles. This finding implies that, if inter-residue hydrogen bonding between O3H and O5' of is present in aqueous solution and persistent, it plays little if any role in dictating preferred linkage conformation. Hydrogen bonding may lower the energy of the preferred linkage geometry but does not determine it to any appreciable extent. Aqueous 1-μs MD simulation supports this conclusion and also indicates greater conformational flexibility in deoxydisaccharide in terms of sampling several, conformationally distinct, higher-energy conformers in solution. The populations of these latter conformers are low (3-14%) and could not be validated by analysis. If the MD model is correct, however, C3 deoxygenation does enable conformational sampling over a wider range of / values, but linkage conformation in the predominant conformer is essentially identical in both and .

Download full-text PDF

Source
http://dx.doi.org/10.1021/acs.jpcb.3c07448DOI Listing

Publication Analysis

Top Keywords

hydrogen bonding
12
linkage conformation
12
inter-residue hydrogen
8
preferred linkage
8
linkage
5
bonding β-1→4-linked
4
β-1→4-linked disaccharides
4
disaccharides influence
4
influence linkage
4
conformation aqueous
4

Similar Publications

Want AI Summaries of new PubMed Abstracts delivered to your In-box?

Enter search terms and have AI summaries delivered each week - change queries or unsubscribe any time!