Transposons are mobile genetic elements that can move to a different position within a genome or between genomes. They have long been used as a tool for genetic engineering, including transgenesis, insertional mutagenesis, and marker excision, in a variety of organisms. The transposon derived from the cabbage looper moth is one of the most promising transposon tools ever identified because has the advantage that it can transpose without leaving a footprint at the excised site. Applying the transposon to precise genome editing in plants, we have demonstrated efficient and precise transposon excision from a transgene locus integrated into the rice genome. Furthermore, introduction of only desired point mutations into the target gene can be achieved by a combination of precise gene modification via homologous recombination-mediated gene targeting with subsequent marker excision from target loci using transposition in rice. In addition, we have designed a -mediated transgenesis system for the temporary expression of sequence-specific nucleases to eliminate the transgene from the host genome without leaving unnecessary sequences after the successful induction of targeted mutagenesis via sequence-specific nucleases for use in vegetatively propagated plants. In this review, we summarize our previous works and the future prospects of genetic engineering with transposon.
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http://dx.doi.org/10.5511/plantbiotechnology.23.0525a | DOI Listing |
Nucleic Acids Res
January 2025
Key Laboratory of Carbohydrate Chemistry and Biotechnology, Ministry of Education, Jiangnan University, NO.1800, Lihu avenue, Wuxi 214122, China.
Inducible systems are crucial to metabolic engineering and synthetic biology, enabling organisms that function as biosensors and produce valuable compounds. However, almost all inducible systems are strain-specific, limiting comparative analyses and applications across strains rapidly. This study designed and presented a robust workflow for developing the cross-species inducible system.
View Article and Find Full Text PDFNucleic Acids Res
January 2025
Department of Convergent Bioscience and Informatics, College of Bioscience and Biotechnology, Chungnam National University, 99, Daehak-ro, Yuseong-gu, Daejeon 34134, Republic of Korea.
Large genetic variants can be generated via homologous recombination (HR), such as polymerase theta-mediated end joining (TMEJ) or single-strand annealing (SSA). Given that these HR-based mechanisms leave specific genomic signatures, we developed GDBr, a genomic signature interpretation tool for DNA double-strand break repair mechanisms using high-quality genome assemblies. We applied GDBr to a draft human pangenome reference.
View Article and Find Full Text PDFNucleic Acids Res
January 2025
SynVaccine Ltd, Ramat Hachayal, 3 Golda Meir Street, Science Park, Nes Ziona 7403648, Israel.
Many viruses of the Flaviviridae family, including the Zika virus (ZIKV), are human pathogens of significant public health concerns. Despite extensive research, there are currently no approved vaccines available for ZIKV and specifically no live-attenuated Zika vaccine. In this current study, we suggest a novel computational algorithm for generating live-attenuated vaccines via the introduction of silent mutation into regions that undergo selection for strong or weak local RNA folding or into regions that exhibit medium levels of sequence conservation.
View Article and Find Full Text PDFSensors (Basel)
December 2024
PIMM Research Laboratory, UMR 8006 CNRS-ENSAM-CNAM, Arts et Metiers Institute of Technology, 151 Boulevard de l'Hôpital, 75013 Paris, France.
This work introduces a novel methodology for identifying critical sensor locations and detecting defects in structural components. Initially, a hybrid method is proposed to determine optimal sensor placements by integrating results from both the discrete empirical interpolation method (DEIM) and the random permutation features importance technique (PI). Subsequently, the identified sensors are utilized in a novel defect detection approach, leveraging a semi-intrusive reduced order modeling and genetic search algorithm for fast and reliable defect detection.
View Article and Find Full Text PDFSensors (Basel)
December 2024
School of Computer Science, University of South China, Hengyang 421001, China.
In exploiting large propagation delays in underwater acoustic (UWA) networks, the time-domain interference alignment (TDIA) mechanism aligns interference signals through delay-aware slot scheduling, creating additional idle time for improved transmission at the medium access control (MAC) layer. However, perfect alignment remains challenging due to arbitrary delays. This study enhances TDIA by incorporating power allocation into its transmission scheduling framework across the physical and MAC layers, following the cross-layer design principle.
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