An - is a type of rooted, arc-weighted, directed acyclic graph with leaf set , that is used in biology to represent the evolutionary history of a set of species. In this paper, we introduce and investigate the space of equidistant -cactuses. This space contains, as a subset, the space of ultrametric trees on that was introduced by Gavryushkin and Drummond. We show that equidistant-cactus space is a CAT(0)-metric space which implies, for example, that there are unique geodesic paths between points. As a key step to proving this, we present a combinatorial result concerning rooted -cactuses. In particular, we show that such graphs can be encoded in terms of a pairwise compatibility condition arising from a poset of collections of pairs of subsets of that satisfy certain set-theoretic properties. As a corollary, we also obtain an encoding of ranked, rooted -trees in terms of partitions of , which provides an alternative proof that the space of ultrametric trees on is CAT(0). We expect that our results will provide the basis for novel ways to perform statistical analyses on collections of equidistant -cactuses, as well as new directions for defining and understanding spaces of more general, arc-weighted phylogenetic networks.
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http://dx.doi.org/10.1007/s00026-023-00656-0 | DOI Listing |
J Chem Theory Comput
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Laboratoire de Biologie et Pharmacologie Appliquée (LBPA), UMR 8113, CNRS, École Normale Supérieure Paris-Saclay, Gif-sur-Yvette 91190, France.
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View Article and Find Full Text PDFThe experience of time and space in subjective perception is closely connected. The Kappa effect refers to the phenomenon where the perceived duration of the time interval between stimuli is influenced by the spatial distance between them. In this study, we aimed to explore the Kappa effect from a psychophysical perspective.
View Article and Find Full Text PDFJ Zoo Wildl Med
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Department of Veterinary Diagnostic and Production Animal Medicine, College of Veterinary Medicine, Iowa State University, Ames, IA 50011, USA,
Lameness is an important veterinary and welfare concern for giraffes in human care. To date, there is limited information on the objective weight-bearing characteristics of the foot in giraffes, making evidence-based decisions for foot care and lameness treatment subjective. Eleven young-adult reticulated giraffes (; median age, 3.
View Article and Find Full Text PDFMagn Reson Med
January 2025
Institute of Biomedical Imaging, Graz University of Technology, Graz, Austria.
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View Article and Find Full Text PDFR Soc Open Sci
July 2024
Graduate School of Life Sciences, Tohoku University, Sendai 980-8578, Japan.
Quantifying species interactions based on empirical observations is crucial for ecological studies. Advancements in nonlinear time-series analyses, particularly S-maps, are promising for high-dimensional and non-equilibrium ecosystems. S-maps sequentially perform a local linear model fitting to the time evolution of neighbouring points on the reconstructed attractor manifold, and the coefficients can approximate the Jacobian elements corresponding to interaction effects.
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