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Transcriptional regulation of genetic variants in the promoter. | LitMetric

Transcriptional regulation of genetic variants in the promoter.

Korean J Physiol Pharmacol

Department of Pharmacology, Inflammation-Cancer Microenvironment Research Center, College of Medicine, Ewha Womans University, Seoul 07804, Korea.

Published: March 2024

AI Article Synopsis

  • The study focuses on the SLC40A1 gene, which encodes ferroportin, a key protein involved in iron export and balance in mammalian cells, with mutations linked to iron-overload disorders and cancer.
  • Researchers identified variations in the promoter region of SLC40A1, examining four haplotypes and five genetic variants, finding significant differences in promoter activity between them.
  • Specific transcription factors, particularly CREB-1 and HLF, were predicted to bind to certain variants, influencing the SLC40A1 transcription levels and indicating potential regulatory mechanisms for iron metabolism.

Article Abstract

encodes ferroportin, which is the only known transmembrane protein that exports elemental iron from mammalian cells and is essential for iron homeostasis. Mutations in are associated with iron-overload disorders. In addition to ferroportin diseases, expression is downregulated in various cancer types. Despite the clinical significance of the SLC40A1 transporter, only a few studies have investigated genetic variants in . The present study was performed to identify genetic variations in the promoter and functionally characterize each variant using assays. We investigated four haplotypes and five variants in the promoter. We observed that haplotype 3 (H3) had significantly lower promoter activity than H1, whereas the activity of H4 was significantly higher than that of H1. Luciferase activity of H2 was comparable to that of H1. In addition, four variants of , c.-1355G>C, c.-662C>T, c.-98G>C, and c.-8C>G, showed significantly increased luciferase activity compared to the wild type (WT), whereas c.-750G>A showed significantly decreased luciferase activity compared to the WT. Three transcription factors, cAMP response element-binding protein-1 (CREB-1), chicken ovalbumin upstream promoter transcription factor 1, and hepatic leukemia factor (HLF), were predicted to bind to the promoter regions of near c.-662C>T, c.-98G>C, and c.-8C>G, respectively. Among these, CREB-1 and HLF bound more strongly to the variant sequences than to the WT and functioned as activators of transcription. Collectively, our findings indicate that the two promoter haplotypes affect transcription, which is regulated by CREB-1 and HLF.

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Source
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC10902591PMC
http://dx.doi.org/10.4196/kjpp.2024.28.2.113DOI Listing

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