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Draft genome sequence data of peanut foliar pathogen from Argentina. | LitMetric

Draft genome sequence data of peanut foliar pathogen from Argentina.

Data Brief

Instituto de Patologia Vegetal, Centro de Investigaciones Agropecuarias, Instituto Nacional de Tecnología Agropecuaria, IPAVE-CIAP-INTA, Av. 11 de Septiembre, Córdoba 4755, Argentina.

Published: April 2024

AI Article Synopsis

Article Abstract

Late leaf spot (LLS) caused by the Ascomycete (N.p.) (Syn. ) is the main foliar disease of peanuts in Argentina and in peanut producing areas of the world, causing up to 70% yield losses. The extremely slow growth of this fungus in culture, that takes around one month to form a 1 cm colony (0.45 mm/day), and the lack of adequate young tissues from where to extract nucleic acids, have hindered genetic studies of this pathogen. Here, we report the first genome sequence of a isolate from South America, as well as genetic variants on its conserved genes, and the complete sequence of its mating-type locus MAT1-2 idiomorph. The isolate IPAVE 0302 was obtained from peanut leaves in Córdoba, Argentina. The whole genome sequencing of IPAVE 0302 was performed as paired end 150 bp NovaSeq 6000 and assembled. Clean reads were mapped to the reference genome for this species NRRL 64463 and the genetic variants on highly conserved genes and throughout the genome were analyzed. Sequencing data were submitted to NCBI GenBank Bioproject PRJNA948451, accession number SRR23957761. Additional Fasta files are available from Harvard Dataverse (https://doi.org/10.7910/DVN/9AGPMG and https://doi.org/10.7910/DVN/YDO3V6). The data reported here will be the basis for the analysis of genetic diversity of the LLS pathogen of peanut in Argentina, information that is critical to make decisions on management strategies.

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Source
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC10875216PMC
http://dx.doi.org/10.1016/j.dib.2024.110158DOI Listing

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