Predicting the synthesizability of a new molecule remains an unsolved challenge that chemists have long tackled with heuristic approaches. Here, we report a new method for predicting synthesizability using a simple yet accurate thermochemical descriptor. We introduce , the energy difference between a molecule and its lowest energy constitutional isomer, as a synthesizability predictor that is accurate, physically meaningful, and first-principles based. We apply to 134,000 molecules in the QM9 data set and find that is accurate when used alone and reduces incorrect predictions of "synthesizable" by up to 52% when used to augment commonly used prediction methods. Our work illustrates how first-principles thermochemistry and heuristic approximations for molecular stability are complementary, opening a new direction for synthesizability prediction methods.
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http://dx.doi.org/10.1021/acs.jcim.3c01583 | DOI Listing |
J Chem Inf Model
December 2024
Department of Chemical, Biological and Bioengineering, North Carolina A&T State University, Greensboro, North Carolina 27411, United States.
Modeling adsorbates on single-crystal metals is critical in rational catalyst design and other research that requires detailed thermochemistry. First-principles simulations via density functional theory (DFT) are among the prevalent tools to acquire such information about surface species. While they are highly dependable, DFT calculations often require intensive computational resources and runtime.
View Article and Find Full Text PDFSci Rep
November 2024
Department of Medicinal Chemistry, School of Pharmacy, Shiraz University of Medical Sciences, Shiraz, Iran.
A novel series of 4-aminopiperidin-3,4-dihyroquinazoline-2-uracil derivatives (9a-9 L) were logically designed and synthesized as potent DPP4 inhibitors as antidiabetic agents. Chemical structure of all new compounds were confirmed by different spectroscopic methods. The designed compounds were evaluated using a MAK 203 kit as DPP4 inhibitors in comparison with Sitagliptin.
View Article and Find Full Text PDFPhys Chem Chem Phys
September 2024
Friedrich Schiller University Jena, Löbdergraben 32, 07743 Jena, Germany.
With more and more accurate electronic structure methods at hand, the inclusion of anharmonic effects in the post-processing of such data towards thermochemical properties is the next step. In this context, the description of anharmonicity has been an important topic of physical chemistry and chemical physics for a long time. In this study, anharmonic frequencies of various hydrogen-halides and halogenated hydrocarbon molecular clusters are calculated using harmonic as well as explicitly anharmonic methods, , normal mode analysis and vibrational self-consistent field.
View Article and Find Full Text PDFHeliyon
May 2024
Computational Vaccine and Drug Design Research Center, Shiraz University of Medical Sciences, Shiraz, Iran.
Inorg Chem
April 2024
Department of Chemistry, University of Rochester, Rochester, New York 14627, United States.
An understanding of how molecular structure influences the thermodynamics of H atom transfer is critical to designing efficient catalysts for reductive chemistries. Herein, we report experimental and theoretical investigations summarizing structure-function relationships of polyoxovanadate-alkoxides that influence bond dissociation free energies of hydroxide ligands located at the surface of the cluster. We evaluate the thermochemical descriptors of O-H bond strength for a series of clusters, namely [VO(OH)(TRIOL)] ( = 2, 4, 6; R = NO, Me) and [VO(OMe)(OH)(TRIOL)], via computational analysis and open circuit potential measurements.
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