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First neurotranscriptome of adults Tambaquis (Colossoma macropomum) with characterization and differential expression between males and females. | LitMetric

First neurotranscriptome of adults Tambaquis (Colossoma macropomum) with characterization and differential expression between males and females.

Sci Rep

Laboratório de Genética Aplicada, Instituto de Estudos Costeiros, Universidade Federal Do Pará, Al. Leandro Ribeiro S/N - Bairro Aldeia, Bragança, Pará, ZIP Code: 68600-000, Brazil.

Published: February 2024

AI Article Synopsis

  • The Tambaqui fish, a key species in the Amazon, is widely studied for its role in fisheries and aquaculture, but more genomic data is needed for better understanding of its reproduction, nutrition, and disease resistance.
  • Next-generation sequencing techniques were employed to create the first transcriptome dataset of the brain's telencephalon in adult male and female Tambaqui, yielding 896,238 transcripts that include 203,790 identified genes.
  • Analysis revealed 91 differentially expressed transcripts linked to reproductive processes and immune responses, highlighting important genes that could serve for improving breeding and welfare practices in Tambaqui farming.

Article Abstract

The Tambaqui is one of the most representative Amazon fish species, being highly exploited in fisheries, aquaculture and as a research model. Nonetheless, data about functional genome are still required to evaluate reproductive and nutrition parameters as well as resistance to pathogens. The of next-generation sequencing has allows assessing the transcriptional processes in non-model species by providing comprehensive gene collections to be used as a database in further genomic applications and increased performance of captive populations. In this study, we relied on RNAseq approach to generate the first transcriptome of the telencephalon from adult males and females of Colossoma macropomum, resulting in a reference dataset for future functional studies. We retrieved 896,238 transcripts, including the identification of 267,785 contigs and 203,790 genes. From this total, 91 transcripts were differentially expressed, being 63 and 28 of them positively regulated for females and males, respectively. The functional annotation resulted in a library of 40 candidate genes for females and 20 for males. The functional enrichment classes comprised reproductive processes (GO:0,048,609; GO:0,003,006; GO:0,044,703; GO:0,032,504; GO:0,019,953) being related to sex differentiation (e.g., SAFB) and immune response (e.g., SLC2A6, AHNAK, NLRC3, NLRP3 and IgC MHC I alpha3), thus indicating that the genes in the neurotranscriptome of Tambaqui participate in sex differentiation and homeostasis of captive specimens. These data are useful to design the selection of genes related to sex determination and animal welfare in raising systems of Tambaqui.

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Source
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC10850070PMC
http://dx.doi.org/10.1038/s41598-024-53734-5DOI Listing

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