Understanding estuarine diversity patterns is crucial to highlight the ecological value of coastal ecosystems for fish assemblages. To increase our knowledge, we investigated the functional diversity of fish assemblages in five estuarine habitats (sandy beaches, mudflats, seagrass meadows, mangrove fringes, and estuarine riparian vegetation) in a tropical estuary of Brazil. Functional diversity metrics were assessed considering seven fish functional traits and calculated using functional indices, PCoA (functional spaces), and community-weighted mean (CWM). Then, a unified RLQ and fourth-corner analysis were used to evaluate environment-trait relationships. A total of 27,036 individuals of 119 species were recorded in all habitats. Functional diversity showed similar trends to estuarine habitats, which were more driven by the spatial configuration rather than by their structure, emphasizing the importance of environmental heterogeneity. There was a greater occupation of functional space to habitats located in the lower estuary compared to the upper estuary. Furthermore, body shapes and trophic guilds were the most common traits related to changes in functional diversity between habitats. The RLQ analysis revealed differences in trait composition between habitats influenced by salinity and transparency, although the fourth corner method did not show a significant relationship between fish functional traits and environmental variables. Our results suggest that the mosaic of habitats support the high functional diversity of fishes in tropical estuaries.
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