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Genome-Wide Identification of bZIP Transcription Factors in and Analysis of Their Expression under Low-Temperature Stress. | LitMetric

Genome-Wide Identification of bZIP Transcription Factors in and Analysis of Their Expression under Low-Temperature Stress.

Plants (Basel)

Key Laboratory of National Forestry and Grassland Administration for Orchid Conservation and Utilization, College of Landscape Architecture and Art, Fujian Agriculture and Forestry University, Fuzhou 350002, China.

Published: January 2024

AI Article Synopsis

  • The bZIP transcription factors are an important family in plants, involved in growth and stress responses, and this study focused on characterizing the CebZIP family through bioinformatics.
  • Researchers identified 70 CebZIP genes distributed across 18 chromosomes, classified into 11 subfamilies with distinct structures and motifs, and noted 19 gene pairs linked through duplication.
  • Analysis of gene expression revealed that under low temperature, these genes were generally up-regulated, although their activation patterns varied, providing insights for future studies on cold resistance in plants.

Article Abstract

The basic leucine zipper (bZIP) transcription factors constitute the most widely distributed and conserved eukaryotic family. They play crucial roles in plant growth, development, and responses to both biotic and abiotic stresses, exerting strong regulatory control over the expression of downstream genes. In this study, a genome-wide characterization of the CebZIP transcription factor family was conducted using bioinformatic analysis. Various aspects, including physicochemical properties, phylogenetics, conserved structural domains, gene structures, chromosomal distribution, gene covariance relationships, promoter -acting elements, and gene expression patterns, were thoroughly analyzed. A total of 70 genes were identified from the genome, and they were randomly distributed across 18 chromosomes. The phylogenetic tree clustered them into 11 subfamilies, each exhibiting complex gene structures and conserved motifs arranged in a specific order. Nineteen pairs of duplicated genes were identified among the 70 genes, with sixteen pairs affected by purifying selection. -acting elements analysis revealed a plethora of regulatory elements associated with stress response, plant hormones, and plant growth and development. Transcriptome and qRT-PCR results demonstrated that the expression of genes was universally up-regulated under low temperature conditions. However, the expression patterns varied among different members. This study provides theoretical references for identifying key genes in that confer resistance to low-temperature stress, and lays the groundwork for further research into their broader biological functions.

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Source
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC10818551PMC
http://dx.doi.org/10.3390/plants13020219DOI Listing

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