Purpose: Improving the quality and maintaining the fidelity of large coverage abdominal hyperpolarized (HP) C MRI studies with a patch based global-local higher-order singular value decomposition (GL-HOVSD) spatiotemporal denoising approach.
Methods: Denoising performance was first evaluated using the simulated [1- C]pyruvate dynamics at different noise levels to determine optimal k and k parameters. The GL-HOSVD spatiotemporal denoising method with the optimized parameters was then applied to two HP [1- C]pyruvate EPI abdominal human cohorts (n = 7 healthy volunteers and n = 8 pancreatic cancer patients).
Results: The parameterization of k = 0.2 and k = 0.9 denoises abdominal HP data while retaining image fidelity when evaluated by RMSE. The k (conversion rate of pyruvate-to-metabolite, X = lactate or alanine) difference was shown to be <20% with respect to ground-truth metabolic conversion rates when there is adequate SNR (SNR > 5) for downstream metabolites. In both human cohorts, there was a greater than nine-fold gain in peak [1- C]pyruvate, [1- C]lactate, and [1- C]alanine apparent SNR . The improvement in metabolite SNR enabled a more robust quantification of k and k . After denoising, we observed a 2.1 ± 0.4 and 4.8 ± 2.5-fold increase in the number of voxels reliably fit across abdominal FOVs for k and k quantification maps.
Conclusion: Spatiotemporal denoising greatly improves visualization of low SNR metabolites particularly [1- C]alanine and quantification of [1- C]pyruvate metabolism in large FOV HP C MRI studies of the human abdomen.
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http://dx.doi.org/10.1002/mrm.29985 | DOI Listing |
bioRxiv
December 2024
Athinoula A. Martinos Center for Biomedical Imaging, Massachusetts General Hospital, Boston, MA, USA.
Over the past two decades, rapid advancements in magnetic resonance technology have significantly enhanced the imaging resolution of functional Magnetic Resonance Imaging (fMRI), far surpassing its initial capabilities. Beyond mapping brain functional architecture at unprecedented scales, high-spatial-resolution acquisitions have also inspired and enabled several novel analytical strategies that can potentially improve the sensitivity and neuronal specificity of fMRI. With small voxels, one can sample from different levels of the vascular hierarchy within the cerebral cortex and resolve the temporal progression of hemodynamic changes from parenchymal to pial vessels.
View Article and Find Full Text PDFObjective: Modeling dynamic neuronal activity within brain networks enables the precise tracking of rapid temporal fluctuations across different brain regions. However, current approaches in computational neuroscience fall short of capturing and representing the spatiotemporal dynamics within each brain network. We developed a novel weakly supervised spatiotemporal dense prediction model capable of generating personalized 4D dynamic brain networks from fMRI data, providing a more granular representation of brain activity over time.
View Article and Find Full Text PDFNpj Imaging
December 2024
Data Sciences Platform (DSP), Broad Institute of MIT and Harvard, Cambridge, MA USA.
Voltage imaging is a powerful technique for studying neuronal activity, but its effectiveness is often constrained by low signal-to-noise ratios (SNR). Traditional denoising methods, such as matrix factorization, impose rigid assumptions about noise and signal structures, while existing deep learning approaches fail to fully capture the rapid dynamics and complex dependencies inherent in voltage imaging data. Here, we introduce CellMincer, a novel self-supervised deep learning method specifically developed for denoising voltage imaging datasets.
View Article and Find Full Text PDFEpilepsia
December 2024
ULB Neuroscience Institute (UNI), Laboratoire de Neuroanatomie et Neuroimagerie Translationnelles (LN2T), Université Libre de Bruxelles (ULB), Bruxelles, Belgium.
Objective: Intracranial single-pulse electrical stimulation (SPES) can elicit cortico-cortical evoked potentials. Their investigation with intracranial EEG is biased by the limited number and selected location of electrodes, which could be circumvented by simultaneous non-invasive whole-scalp recording. This study aimed at investigating the ability of magnetoencephalography (MEG) to characterize cortico-cortical evoked fields (CCEFs) and effective connectivity between the epileptogenic zone (EZ) and non-epileptogenic zone (i.
View Article and Find Full Text PDFNat Commun
November 2024
Department of Applied Physics, The Hong Kong Polytechnic University, Hong Kong, 999077, P. R. China.
The human visual system's adaptability to varying brightness levels has inspired the development of optoelectronic neuromorphic devices. However, achieving bidirectional photoresponse, essential for mimicking these functions, often requires high operation voltages or high light intensities. Here, we propose a bidirectional ZnO/CsPbBr heterostructure based neuromorphic image sensor array (10 × 10 pixels) capable of ultraweak light stimulation.
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