Unifying pairwise interactions in complex dynamics.

Nat Comput Sci

School of Physics, The University of Sydney, Camperdown, New South Wales, Australia.

Published: October 2023

Scientists have developed hundreds of techniques to measure the interactions between pairs of processes in complex systems, but these computational methods-from contemporaneous correlation coefficients to causal inference methods-define and formulate interactions differently, using distinct quantitative theories that remain largely disconnected. Here we introduce a large assembled library of 237 statistics of pairwise interactions, and assess their behavior on 1,053 multivariate time series from a wide range of real-world and model-generated systems. Our analysis highlights commonalities between disparate mathematical formulations of interactions, providing a unified picture of a rich interdisciplinary literature. Using three real-world case studies, we then show that simultaneously leveraging diverse methods can uncover those most suitable for addressing a given problem, facilitating interpretable understanding of the quantitative formulation of pairwise dependencies that drive successful performance. Our results and accompanying software enable comprehensive analysis of time-series interactions by drawing on decades of diverse methodological contributions.

Download full-text PDF

Source
http://dx.doi.org/10.1038/s43588-023-00519-xDOI Listing

Publication Analysis

Top Keywords

pairwise interactions
8
interactions
6
unifying pairwise
4
interactions complex
4
complex dynamics
4
dynamics scientists
4
scientists developed
4
developed hundreds
4
hundreds techniques
4
techniques measure
4

Similar Publications

Visible-infrared person re-identification (VI-ReID) is a challenging cross-modality retrieval task to match a person across different spectral camera views. Most existing works focus on learning shared feature representations from the final embedding space of advanced networks to alleviate modality differences between visible and infrared images. However, exclusively relying on high-level semantic information from the network's final layers can restrict shared feature representations and overlook the benefits of low-level details.

View Article and Find Full Text PDF

Unveiling the Movement of RanBP1 During the Cell Cycle and Its Interaction with a Cyclin-Dependent Kinase (CDK) in Plants.

Int J Mol Sci

December 2024

Departamento de Biologia, Faculdade de Filosofia, Ciências e Letras de Ribeirão Preto, Universidade de São Paulo, Ribeirão Preto 14040-901, SP, Brazil.

In the flower development study, we identified SCI1 (Stigma/style Cell-cycle Inhibitor 1), a regulator of cell proliferation. SCI1 interacts with NtCDKG;2 ( Cyclin-Dependent Kinase G;2), a homolog of human CDK11, which is responsible for RanGTP-dependent microtubule stabilization, regulating spindle assembly rate. In a Y2H screening of a cDNA library using NtCDKG;2 as bait, a RanBP1 (Ran-Binding Protein 1) was revealed as its interaction partner.

View Article and Find Full Text PDF

Graph neural networks in histopathology: Emerging trends and future directions.

Med Image Anal

January 2025

Leiden University Medical Center, Albinusdreef 2, 2333 ZA, Leiden, The Netherlands; Amsterdam University Medical Center, Meibergdreef 9, 1105 AZ, Amsterdam, The Netherlands.

Histopathological analysis of whole slide images (WSIs) has seen a surge in the utilization of deep learning methods, particularly Convolutional Neural Networks (CNNs). However, CNNs often fail to capture the intricate spatial dependencies inherent in WSIs. Graph Neural Networks (GNNs) present a promising alternative, adept at directly modeling pairwise interactions and effectively discerning the topological tissue and cellular structures within WSIs.

View Article and Find Full Text PDF

Differential Responses of Methylobacterium and Sphingomonas Species to Multispecies Interactions in the Phyllosphere.

Environ Microbiol

January 2025

Institute of Microbiology and Dahlem Centre of Plant Sciences, Department of Biology, Chemistry, Pharmacy, Freie Universität Berlin, Berlin, Germany.

The leaf surface, known as the phylloplane, presents an oligotrophic and heterogeneous environment due to its topography and uneven distribution of resources. Although it is a challenging environment, leaves support abundant bacterial communities that are spatially structured. However, the factors influencing these spatial distribution patterns are not well understood.

View Article and Find Full Text PDF

Objectives: To form a unique body weight support-Tai Chi Yunshou (BWS-TCY) training method, apply it to the treatment of upper limb dysfunction after stroke, and provide a new safe and effective treatment method for the clinic.

Methods: A total of 93 subjects were recruited and randomly divided into conventional rehabilitation treatment (CRT) group, BWS-TCY group and traditional robot-assisted training (RAT) group in equal proportions. Subjects in the CRT group received 60 minutes of CRT daily.

View Article and Find Full Text PDF

Want AI Summaries of new PubMed Abstracts delivered to your In-box?

Enter search terms and have AI summaries delivered each week - change queries or unsubscribe any time!