The fundamental relationship between the mesoscopic structure of neuronal circuits and organismic functions they subserve is one of the major challenges in contemporary neuroscience. Formation of structurally connected modules of neurons enacts the conversion from single-cell firing to large-scale behaviour of an organism, highlighting the importance of their accurate profiling in the data. While connectomes are typically characterized by significant sparsity of neuronal connections, recent advances in network theory and machine learning have revealed fundamental limitations of traditionally used community detection approaches in cases where the network is sparse. Here we studied the optimal community structure in the structural connectome of Caenorhabditis elegans, for which we exploited a non-conventional approach that is based on non-backtracking random walks, virtually eliminating the sparsity issue. In full agreement with the previous asymptotic results, we demonstrated that non-backtracking walks resolve the ground truth annotation into clusters on stochastic block models (SBM) with the size and density of the connectome better than the spectral methods related to simple random walks. Based on the cluster detectability threshold, we determined that the optimal number of modules in a recently mapped connectome of C. elegans is 10, which precisely corresponds to the number of isolated eigenvalues in the spectrum of the non-backtracking flow matrix. The discovered communities have a clear interpretation in terms of their functional role, which allows one to discern three structural compartments in the worm: the Worm Brain (WB), the Worm Movement Controller (WMC), and the Worm Information Flow Connector (WIFC). Broadly, our work provides a robust network-based framework to reveal mesoscopic structures in sparse connectomic datasets, paving way to further investigation of connectome mechanisms for different functions.
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http://dx.doi.org/10.1038/s41598-023-49503-5 | DOI Listing |
Sci Rep
December 2023
Skolkovo Institute of Science and Technology, Moscow, Russia, 121205.
The fundamental relationship between the mesoscopic structure of neuronal circuits and organismic functions they subserve is one of the major challenges in contemporary neuroscience. Formation of structurally connected modules of neurons enacts the conversion from single-cell firing to large-scale behaviour of an organism, highlighting the importance of their accurate profiling in the data. While connectomes are typically characterized by significant sparsity of neuronal connections, recent advances in network theory and machine learning have revealed fundamental limitations of traditionally used community detection approaches in cases where the network is sparse.
View Article and Find Full Text PDFSci Rep
July 2020
Institute of Gene Biology, Russian Academy of Sciences, Moscow, Russia.
Chromatin communities stabilized by protein machinery play essential role in gene regulation and refine global polymeric folding of the chromatin fiber. However, treatment of these communities in the framework of the classical network theory (stochastic block model, SBM) does not take into account intrinsic linear connectivity of the chromatin loci. Here we propose the polymer block model, paving the way for community detection in polymer networks.
View Article and Find Full Text PDFProc Math Phys Eng Sci
March 2020
Department of Mathematics and Systems Analysis, Aalto University, PO Box 11100, 00076 Aalto, Finland.
Walks around a graph are studied in a wide range of fields, from graph theory and stochastic analysis to theoretical computer science and physics. In many cases it is of interest to focus on non-backtracking walks; those that do not immediately revisit their previous location. In the network science context, imposing a non-backtracking constraint on traditional walk-based node centrality measures is known to offer tangible benefits.
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March 2016
naXys, University of Namur, Rempart de la Vierge 8, 5000 Namur, Belgium.
Complex systems made of interacting elements are commonly abstracted as networks, in which nodes are associated with dynamic state variables, whose evolution is driven by interactions mediated by the edges. Markov processes have been the prevailing paradigm to model such a network-based dynamics, for instance in the form of random walks or other types of diffusions. Despite the success of this modelling perspective for numerous applications, it represents an over-simplification of several real-world systems.
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March 2015
Faculty of Life Sciences, University of Manchester.
Spectral algorithms based on matrix representations of networks are often used to detect communities, but classic spectral methods based on the adjacency matrix and its variants fail in sparse networks. New spectral methods based on non-backtracking random walks have recently been introduced that successfully detect communities in many sparse networks. However, the spectrum of non-backtracking random walks ignores hanging trees in networks that can contain information about their community structure.
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