There are many unidentified microbes in polluted soil needing to be explored and nominated to benefit the study of microbial ecology. In this study, a taxonomic research was carried out on five bacterial strains which were isolated and cultivated from polycyclic aromatic hydrocarbons, and heavy metals polluted soil of an abandoned coking plant. Phylogenetical analysis showed that they belonged to the phyla and , and their 16S rRNA gene sequence identities were lower than 98.5% to any known and validly nominated bacterial species, suggesting that they were potentially representing new species. Using polyphasic taxonomic approaches, the five strains were classified as new species of the families and . Genome sizes of the five strains ranged from 3.07 to 6.60 Mb, with overall DNA G+C contents of 63.57-71.22 mol%. The five strains had average nucleotide identity of 72.38-87.38% and digital DNA-DNA hybridization of 14.0-34.2% comparing with their closely related type strains, which were all below the thresholds for species delineation, supporting these five strains as novel species. Based on the phylogenetic, phylogenomic, and phenotypic characterizations, the five novel species are proposed as (type strain H3Y2-19a = CGMCC 1.61332), (type strain H3M29-4 = CGMCC 1.61335T), (type strain H3SJ31-1 = CGMCC 1.61329), (type strain H39-1-10 = CGMCC 1.61325), and (type strain H39-3-25 = CGMCC 1.61326). Comparative genome analysis revealed that the species of the family represented by H39-1-10, H39-3-25, and H3SJ31-1 possessed more functional protein-coding genes for the degradation of aromatic pollutants than the species of the family represented by H3Y2-19a and H3M29-4. Furthermore, their capacities of resisting heavy metals and metabolizing aromatic compounds were investigated. The results indicated that strains H3Y2-19a and H39-3-25 were robustly resistant to chromate (VI) and/or arsenite (III). Strains H39-1-10 and H39-3-25 grew on aromatic compounds, including naphthalene, as carbon sources even in the presence of chromate (VI) and arsenite (III). These features reflected their adaptation to the polluted soil environment.
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http://dx.doi.org/10.3389/fmicb.2023.1289110 | DOI Listing |
Curr Microbiol
January 2025
Department of Microbiology, Faculty of Science, Kasetsart University, Chatuchak, Bangkok, 10900, Thailand.
An aerobic, Gram-stain-positive, motile, coccus-shaped actinomycete, designated strain LSe6-4, was isolated from leaves of sea purslane (Sesuvium portulacastrum L.) in Thailand and subjected to a polyphasic taxonomic studies. Growth of the strain occurred at temperatures between 15 and 38 °C, and with NaCl concentrations 0-13%.
View Article and Find Full Text PDFJ Agric Food Chem
January 2025
College of Environmental Science and Engineering, Yangzhou University, Yangzhou 225009, China.
Phytoene synthase (PSY) is one of key enzymes in carotenogenesis that catalyze two molecules of geranylgeranyl diphosphate to produce phytoene. PSY is widespread in bacteria, archaea, and eukaryotes. Currently, functional role and catalytic mechanism of archaeal PSY homologues have not been fully clarified due to the limited reports.
View Article and Find Full Text PDFJ Nat Prod
January 2025
Department of Chemical and Biological engineering, School of Engineering and Technology, National University of Mongolia, Ulaanbaatar 14201, Mongolia.
A chemical examination of a root extract of led to the isolation and identification of 23 compounds, including oxazole-type alkaloids and isoflavonoid derivatives. Notably, three oxazole-type alkaloids (, , and ) and two isoflavonoid derivatives ( and ) were obtained from a natural source for the first time. In addition, derived 2,5-diphenyloxazoles and their derivatives were synthesized.
View Article and Find Full Text PDFJ Appl Microbiol
January 2025
Graduate School of Human Life and Ecology, Osaka Metropolitan University, 3-3-138, Sugimoto, Sumiyoshi-Ku, Osaka 558-8585, Japan.
Aims: To investigate the effects of Lactococcus lactis subsp. lactis strains LL100933 and LL12007 on the host defense mechanisms of Caenorhabditis elegans against pathogenic infections and stressors.
Methods And Results: C.
Chembiochem
January 2025
Jiangnan University, State Key Laboratory of Food Science and Technology, 1800 Lihu Road, Wuxi, China, 214122, Wuxi, CHINA.
Indigo is widely used in dyes, medicines and semiconductors materials due to its excellent dyeing efficiency, antibacterial, antiviral, anticancer, anti-corrosion, and thermostability properties. Here, a biosynthetic pathway for indigo was designed, integrating two enzymes (EcTnaA, MaFMO) into a higher L-tryptophan-producing the strain Escherichia coli TRP. However, the lower catalytic activity of MaFMO was a bottleneck for increasing indigo titers.
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