Integrative approaches for characterizing protein dynamics: NMR, CryoEM, and computer simulations.

Curr Opin Struct Biol

University of Delaware, Department of Chemistry and Biochemistry, Newark DE, United States; Pittsburgh Center for HIV Protein Interactions, University of Pittsburgh School of Medicine, Pittsburgh PA, United States. Electronic address:

Published: February 2024

AI Article Synopsis

  • Proteins are dynamic molecules, with their internal movements crucial for carrying out biological functions over various timescales, from picoseconds to milliseconds.
  • Observing these dynamics requires a combination of experimental techniques like NMR spectroscopy and cryo-electron microscopy, along with computational methods like molecular dynamics simulations.
  • The insights gained from studying protein motions can help advance the development of new therapeutic strategies.

Article Abstract

Proteins are inherently dynamic and their internal motions are essential for biological function. Protein motions cover a broad range of timescales: 10-10 s, spanning from sub-picosecond vibrational motions of atoms via microsecond loop conformational rearrangements to millisecond large amplitude domain reorientations. Observing protein dynamics over all timescales and connecting motions and structure to biological mechanisms requires integration of multiple experimental and computational techniques. This review reports on state-of-the-art approaches for assessing dynamics in biological systems using recent examples of virus assemblies, enzymes, and molecular machines. By integrating NMR spectroscopy in solution and the solid state, cryo electron microscopy, and molecular dynamics simulations, atomistic pictures of protein motions are obtained, not accessible from any single method in isolation. This information provides fundamental insights into protein behavior that can guide the development of future therapeutics.

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Source
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC10922663PMC
http://dx.doi.org/10.1016/j.sbi.2023.102736DOI Listing

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