This study provides a laboratory framework to ensure ongoing relevance and performance of amplification-based whole genome sequencing to strengthen public health surveillance during extended outbreaks or pandemics. The framework integrates regular reviews of the performance of a genomic surveillance system and highlights the importance of ongoing monitoring and the identification and implementation of improvements to whole genome sequencing methods to enhance public health responses to pathogen outbreaks.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC10715188PMC
http://dx.doi.org/10.1128/spectrum.02202-23DOI Listing

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