Genome-Wide Analysis of Q-Type C2H2 ZFP Genes in Response to Biotic and Abiotic Stresses in Sugar Beet.

Biology (Basel)

Ministry of Agriculture and Rural Affairs Key Laboratory of Pest Monitoring and Green Management, College of Plant Protection, China Agricultural University, Beijing 100193, China.

Published: October 2023

AI Article Synopsis

  • A study identified 35 Q-type C2H2-type zinc finger proteins (BvZFPs) in sugar beet, which are important for plant growth and stress responses.
  • These proteins were classified into five subclasses based on their evolutionary relationships and showed conserved features during evolution.
  • The research suggests that BvZFPs are mainly active in the roots of sugar beet and play a crucial role in responding to stresses like salt and viral infections, offering insights for breeding more resilient sugar beet varieties.

Article Abstract

A plant's Q-type C2H2-type ZFP plays key roles in plant growth and development and responses to biotic and abiotic stresses. Sugar beet ( L.) is an important crop for sugar production. Salt stress and viral infection significantly reduce the root yield and sugar content of sugar beet. However, there is a lack of comprehensive genome-wide analyses of Q-type C2H2 ZFPs and their expression patterns in sugar beet under stress. In this study, 35 sugar beet Q-type C2H2 ZFPs (BvZFPs) containing at least one conserved "QALGGH" motif were identified via bioinformatics techniques using TBtools software. According to their evolutionary relationship, the BvZFPs were classified into five subclasses. Within each subclass, the physicochemical properties and motif compositions showed strong similarities. A Ka/Ks analysis indicated that the were conserved during evolution. Promoter cis-element analysis revealed that most are associated with elements related to phytohormone, biotic or abiotic stress, and plant development. The expression data showed that the in sugar beet are predominantly expressed in the root. In addition, are involved in the response to abiotic and biotic stresses, including salt stress and viral infection. Overall, these results will extend our understanding of the Q-type C2H2 gene family and provide valuable information for the biological breeding of sugar beet against abiotic and biotic stresses in the future.

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Source
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC10604892PMC
http://dx.doi.org/10.3390/biology12101309DOI Listing

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