Summary: Fastlin is a bioinformatics tool designed for rapid Mycobacterium tuberculosis complex (MTBC) lineage typing. It utilizes an ultra-fast alignment-free approach to detect previously identified barcode single nucleotide polymorphisms associated with specific MTBC lineages. In a comprehensive benchmarking against existing tools, fastlin demonstrated high accuracy and significantly faster running times.
Availability And Implementation: fastlin is freely available at https://github.com/rderelle/fastlin and can easily be installed using Conda.
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| http://www.ncbi.nlm.nih.gov/pmc/articles/PMC10627351 | PMC |
| http://dx.doi.org/10.1093/bioinformatics/btad648 | DOI Listing |
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