sp. nov., a Novel Species of the GKS98 Cluster Isolated from a Stream, and the Reclassification of 'Achromobacter Panacis' as comb. nov.

Microorganisms

Department of Biological Sciences and Bioengineering, Inha University, Incheon 22212, Republic of Korea.

Published: August 2023

AI Article Synopsis

  • A new Gram-stain-negative bacterium, IMCC34845, was discovered in a freshwater stream in South Korea, and is characterized as aerobic, motile, and rod-shaped.
  • Phylogenetic analysis linked it closely to 'Achromobacter panacis,' but genetic testing proved that IMCC34845 and related strains are distinct species.
  • The strain's genetic makeup and chemical properties support its classification as a novel species within its genus, leading to the proposal of a new name for it and recommending a reclassification of 'Achromobacter panacis.'

Article Abstract

A Gram-stain-negative, aerobic, motile by gliding, and rod-shaped bacterium, designated IMCC34845, was isolated from a freshwater stream in the Republic of Korea. The results of 16S rRNA gene-based phylogenetic analyses showed that strain IMCC34845 was affiliated with the genus and was most closely related to 'Achromobacter panacis' DCY105 (100%) and LF4-65 (98.9%). The whole-genome sequence of strain IMCC34845 was 3.2 Mbp in size with a 51.5% DNA G+C content. The average nucleotide identity (ANI) and digital DNA-DNA hybridization (dDDH) values between strain IMCC34845 and 'Achromobacter panacis' KCTC 42751 were 77.7% and 20.7%, respectively, revealing that they are independent species. Moreover, the strains IMCC34845 and KCTC 42751 exhibited ≤ 72.5% ANI and ≤18.5% dDDH values with closely related species LF4-65, further supporting that the two strains represent each novel species of the genus. The major respiratory quinone of strain IMCC34845 was ubiquinone-8 (Q-8), and the predominant cellular fatty acids were C (41.3%) and C cyclo (34.5%). The major polar lipids of the strain were diphosphatidylglycerol, phosphatidylglycerol, phosphatidylethanolamine, unidentified phospholipids, and unidentified aminolipids. Based on the phylogenetic, genomic, physiological, and chemotaxonomic characteristics, strain IMCC34845 was considered to represent a novel species within the genus , for which the name sp. nov. is proposed. The type of strain is IMCC34845 (=KCTC 92920 = NBRC 114902). Furthermore, based on the taxonomic data, 'Achromobacter panacis' is proposed to be reclassified as comb. nov.

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Source
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC10535154PMC
http://dx.doi.org/10.3390/microorganisms11092150DOI Listing

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Article Synopsis
  • A new Gram-stain-negative bacterium, IMCC34845, was discovered in a freshwater stream in South Korea, and is characterized as aerobic, motile, and rod-shaped.
  • Phylogenetic analysis linked it closely to 'Achromobacter panacis,' but genetic testing proved that IMCC34845 and related strains are distinct species.
  • The strain's genetic makeup and chemical properties support its classification as a novel species within its genus, leading to the proposal of a new name for it and recommending a reclassification of 'Achromobacter panacis.'
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