What If Root Nodules Are a Guesthouse for a Microbiome? The Case Study of .

Biology (Basel)

Centre for Ecology, Evolution and Environmental Change (cE3c), Faculty of Sciences, University of Lisbon (FCUL), Global Change and Sustainability Institute (CHANGE), 1749-016 Lisboa, Portugal.

Published: August 2023

is one of the most aggressive invaders worldwide whose invasion is potentiated after a fire, a common perturbation in Mediterranean climates. As a legume, this species establishes symbioses with nitrogen-fixing bacteria inside root nodules; however, the overall microbial diversity is still unclear. In this study, we addressed root nodules' structure and biodiversity through histology and Next-Generation Sequencing, targeting 16S and 25S-28S rDNA genes for bacteria and fungi, respectively. We wanted to evaluate the effect of fire in root nodules from 1-year-old saplings, by comparing unburnt and burnt sites. We found that although having the same general structure, after a fire event, nodules had a higher number of infected cells and greater starch accumulation. Starch accumulated in uninfected cells can be a possible carbon source for the microbiota. Regarding diversity, was dominant in both sites (ca. 77%), suggesting it is the preferential partner, followed by (ca. 9%), a non-rhizobial Alphaproteobacteria, and , a cyanobacteria (ca. 5%). However, at the burnt site, additional N-fixing bacteria were included in the top 10 genera, highlighting the importance of this process. Major differences were found in the mycobiome, which was diverse in both sites and included genera mostly described as plant endophytes. was dominant in nodules from the burnt site (69%), suggesting its role as a facilitator of symbiotic associations. We highlight the presence of a large bacterial and fungal community in nodules, suggesting nodulation is not restricted to nitrogen fixation. Thus, this microbiome can be involved in facilitating invasive success.

Download full-text PDF

Source
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC10525506PMC
http://dx.doi.org/10.3390/biology12091168DOI Listing

Publication Analysis

Top Keywords

root nodules
12
burnt site
8
nodules
5
root
4
nodules guesthouse
4
guesthouse microbiome?
4
microbiome? case
4
case study
4
study aggressive
4
aggressive invaders
4

Similar Publications

Closed genomes of commercial inoculant rhizobia provide a blueprint for management of legume inoculation.

Appl Environ Microbiol

January 2025

Legume Rhizobium Sciences, Food Futures Institute, Murdoch University, Murdoch, Western Australia, Australia.

Unlabelled: Rhizobia are soil bacteria capable of establishing symbiosis within legume root nodules, where they reduce atmospheric N into ammonia and supply it to the plant for growth. Australian soils often lack rhizobia compatible with introduced agricultural legumes, so inoculation with exotic strains has become a common practice for over 50 years. While extensive research has assessed the N-fixing capabilities of these inoculants, their genomics, taxonomy, and core and accessory gene phylogeny are poorly characterized.

View Article and Find Full Text PDF

Pseudomonas in the spotlight: emerging roles in the nodule microbiome.

Trends Plant Sci

January 2025

Genetics, Faculty of Biology, Ludwig Maximilian University of Munich, 82152 Planegg-Martinsried, Munich, Germany; Department of Plant Molecular Biology, University of Lausanne, 1015 Lausanne, Switzerland. Electronic address:

While rhizobia have long been recognised as the primary colonisers of legume nodules, microbiome studies have revealed the presence of other bacteria in these organs. This opinion delves into the factors shaping the nodule microbiome and explores the potential roles of non-rhizobial endophytes, focusing particularly on Pseudomonas as prominent players. We explore the mechanisms by which Pseudomonas colonise nodules, their interactions with rhizobia, and their remarkable potential to promote plant growth and protect against pathogens.

View Article and Find Full Text PDF

In this study, dual-root soybean ( L. Merr.) plants, with one side nodulated and the other nonnodulated, were used as experimental materials.

View Article and Find Full Text PDF

GmbZIP4a/b Positively Regulate Nodule Number by Affecting Cytokinin Biosynthesis in .

Int J Mol Sci

December 2024

Guangdong Provincial Key Laboratory of Plant Adaptation and Molecular Design, Innovative Center of Molecular Genetics and Evolution, School of Life Sciences, Guangzhou University, Guangzhou 510006, China.

Legumes have the capability to form nodules that facilitate symbiotic nitrogen fixation (SNF) with rhizobia. Given the substantial energy consumption during the process of SNF, legumes need to optimize nodule number in response to everchanging environmental scenarios. The TGACG BINDING FACTOR1/4 (TGA1/4) are key players in the basal immune response of plants.

View Article and Find Full Text PDF

GmERF13 mediates salt inhibition of nodulation through interacting with GmLBD16a in soybean.

Nat Commun

January 2025

The Key Laboratory of Plant Development and Environmental Adaptation Biology, Ministry of Education; Shandong Key Laboratory of Precision Molecular Crop Design and Breeding; School of Life Sciences, Shandong University, Qingdao, Shandong, China.

While the genetic regulation of nodule formation has been well explored, the molecular mechanisms by which abiotic stresses, such as salt stress, impede nodule formation remain largely elusive. Here, we identify four APETALA2/Ethylene Responsive Factor (AP2/ERF) transcription factors, GmERF13s, that are induced by salt stress and play key roles in salt-repressed nodulation. Loss of GmERF13 function increases nodule density, while its overexpression suppresses nodulation.

View Article and Find Full Text PDF

Want AI Summaries of new PubMed Abstracts delivered to your In-box?

Enter search terms and have AI summaries delivered each week - change queries or unsubscribe any time!