AI has been widely applied in scientific scenarios, such as robots performing chemical synthetic actions to free researchers from monotonous experimental procedures. However, there exists a gap between human-readable natural language descriptions and machine-executable instructions, of which the former are typically in numerous chemical articles, and the latter are currently compiled manually by experts. We apply the latest technology of pre-trained models and achieve automatic transcription between descriptions and instructions. We design a concise and comprehensive schema of instructions and construct an open-source human-annotated dataset consisting of 3950 description-instruction pairs, with 9.2 operations in each instruction on average. We further propose knowledgeable pre-trained transcription models enhanced by multi-grained chemical knowledge. The performance of recent popular models and products showing great capability in automatic writing (, ChatGPT) has also been explored. Experiments prove that our system improves the instruction compilation efficiency of researchers by at least 42%, and can generate fluent academic paragraphs of synthetic descriptions when given instructions, showing the great potential of pre-trained models in improving human productivity.
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http://dx.doi.org/10.1039/d3sc02483k | DOI Listing |
JAMA Netw Open
January 2025
Division of Intramural Research, National Institute on Minority Health and Health Disparities, Bethesda, Maryland.
Importance: Cigarette companies have been introducing synthetic cooling agent menthol-mimicking cigarettes into the US marketplace as menthol cigarette bans are implemented. These cigarettes may reduce the public health benefits of menthol cigarette bans.
Objective: To examine the epidemiology of the use of synthetic cooling agent menthol-mimicking cigarettes among adults in the US.
Chem Rev
January 2025
Weill Institute for Cell and Molecular Biology, Cornell University, Ithaca, New York 14853, United States.
Cells contain thousands of different lipids. Their rapid and redundant metabolism, dynamic movement, and many interactions with other biomolecules have justly earned lipids a reputation as a vexing class of molecules to understand. Further, as the cell's hydrophobic metabolites, lipids assemble into supramolecular structures─most commonly bilayers, or membranes─from which they carry out myriad biological functions.
View Article and Find Full Text PDFJ Vis Exp
December 2024
Institute for Synthetic Microbiology, Heinrich Heine University Düsseldorf; Department of Biochemistry and Molecular Biology, Michigan State University.
With the increasing demand for sustainable biotechnologies, mixed consortia containing a phototrophic microbe and heterotrophic partner species are being explored as a method for solar-driven bioproduction. One approach involves the use of CO2-fixing cyanobacteria that secrete organic carbon to support the metabolism of a co-cultivated heterotroph, which in turn transforms the carbon into higher-value goods or services. In this protocol, a technical description to assist the experimentalist in the establishment of a co-culture combining a sucrose-secreting cyanobacterial strain with a fungal partner(s), as represented by model yeast species, is provided.
View Article and Find Full Text PDFBiol Imaging
November 2024
Institut de Recherche en Informatique de Toulouse (IRIT), CNRS & Université de Toulouse, Toulouse, France.
We propose a neural network architecture and a training procedure to estimate blurring operators and deblur images from a single degraded image. Our key assumption is that the forward operators can be parameterized by a low-dimensional vector. The models we consider include a description of the point spread function with Zernike polynomials in the pupil plane or product-convolution expansions, which incorporate space-varying operators.
View Article and Find Full Text PDFEpidemiology
November 2024
Center for Opioid Epidemiology and Policy, Department of Population Health, NYU Grossman School of Medicine, NY.
Background: Medications for opioid use disorder are associated with lower risk of drug overdoses at the individual level. However, little is known about whether these effects translate to population-level reductions. We investigated whether county-level efforts to increase access to medication for opioid use disorder in 2012-2014 were associated with opioid overdose deaths in New York State during the first years of the synthetic opioid crisis.
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