Comparative genomic and transcriptomic analyses of African swine fever virus strains.

Comput Struct Biotechnol J

Department of Applied Biological Chemistry, Graduate School of Agricultural and Life Science, The University of Tokyo, 1-1-1 Yayoi, Bunkyo-ku, Tokyo 113-8657, Japan.

Published: August 2023

AI Article Synopsis

  • * Although two vaccines are available in Vietnam, the complexity of the ASF virus requires a broader vaccine strategy, prompting research on potential vaccine targets.
  • * The study analyzed genomic and transcriptomic data from various ASFV strains, identifying key genes linked to high virulence and suggesting candidate ORFs for future vaccine and therapy development.

Article Abstract

African swine fever (ASF) is the most devastating disease caused by the African swine fever virus (ASFV), impacting the pig industry worldwide and threatening food security and biodiversity. Although two vaccines have been approved in Vietnam to combat ASFV, the complexity of the virus, with its numerous open reading frames (ORFs), necessitates a more diverse vaccine strategy. Therefore, we focused on identifying and investigating the potential vaccine targets for developing a broad-spectrum defense against the virus. This study collected the genomic and/or transcriptomic data of different ASFV strains, specifically from studies, focusing on comparisons between genotypes I, II, and X, from the National Center for Biotechnology Information (NCBI) database. The comprehensive analysis of the genomic and transcriptomic differences between high- and low-virulence strains revealed six early genes, 13 late genes, and six short genes as potentially essential ORFs associated with high-virulence. In addition, many other ORFs ( 14 multigene family members) are worth investigating. The results of this study provided candidate ORFs for developing ASF vaccines and therapies.

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Source
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC10497913PMC
http://dx.doi.org/10.1016/j.csbj.2023.08.028DOI Listing

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