AI Article Synopsis

  • Malate and tartrate are chiral compounds with different stereoisomers, and their dehydration processes yield achiral compounds fumarate and oxaloacetate.
  • Class-I fumarate hydratase (FH) and L-tartrate dehydratase (L-TTD) are conserved enzymes that specifically catalyze reactions with particular stereoisomers of malate and tartrate.
  • Phylogenetic analysis suggests a shared evolutionary background for these enzymes, with differences in substrate specificity likely caused by conformational changes in their active sites rather than significant structural variations.

Article Abstract

Malate (2-hydroxysuccinic acid) and tartrate (2,3-dihydroxysuccinic acid) are chiral substrates; the former existing in two enantiomeric forms (R and S) while the latter exists as three stereoisomers (R,R; S,S; and R,S). Dehydration by stereospecific hydrogen abstraction and antielimination of the hydroxyl group yield the achiral products fumarate and oxaloacetate, respectively. Class-I fumarate hydratase (FH) and L-tartrate dehydratase (L-TTD) are two highly conserved enzymes belonging to the iron-sulfur cluster hydrolyase family of enzymes that catalyze reactions on specific stereoisomers of malate and tartrate. FH from Methanocaldococcus jannaschii accepts only (S)-malate and (S,S)-tartrate as substrates while the structurally similar L-TTD from Escherichia coli accepts only (R)-malate and (R,R)-tartrate as substrates. Phylogenetic analysis reveals a common evolutionary origin of L-TTDs and two-subunit archaeal FHs suggesting a divergence during evolution that may have led to the switch in substrate stereospecificity preference. Due to the high conservation of their sequences, a molecular basis for switch in stereospecificity is not evident from analysis of crystal structures of FH and predicted structure of L-TTD. The switch in enantiomer preference may be rationalized by invoking conformational plasticity of the amino acids interacting with the substrate, together with substrate reorientation and conformer selection about the C2C3 bond of the dicarboxylic acid substrates. Although classical models of enzyme-substrate binding are insufficient to explain such a phenomenon, the enantiomer superposition model suggests that a minor reorientation in the active site residues could lead to the switch in substrate stereospecificity.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC10535810PMC
http://dx.doi.org/10.1002/pro.4779DOI Listing

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