Solid state (ss-) Al NMR is one of the most valuable tools for the experimental characterization of zeolites, owing to its high sensitivity and the detailed structural information which can be extracted from the spectra. Unfortunately, the interpretation of ss-NMR is complex and the determination of aluminum distributions remains generally unfeasible. As a result, computational modelling of Al ss-NMR spectra has grown increasingly popular as a means to support experimental characterization. However, a number of simplifying assumptions are commonly made in NMR modelling, several of which are not fully justified. In this work, we systematically evaluate the effects of various common models on the prediction of Al NMR chemical shifts in zeolites CHA and MOR. We demonstrate the necessity of modelling; in particular, taking into account the effects of water loading, temperature and the character of the charge-compensating cation. We observe that conclusions drawn from simple, high symmetry model systems such as CHA do not transfer well to more complex zeolites and can lead to qualitatively wrong interpretations of peak positions, Al assignment and even the number of signals. We use machine learning regression to develop a simple yet robust relationship between chemical shift and local structural parameters in Al-zeolites. This work highlights the need for sophisticated models and high-quality sampling in the field of NMR modelling and provides correlations which allow for the accurate prediction of chemical shifts from dynamical simulations.
Download full-text PDF |
Source |
---|---|
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC10466278 | PMC |
http://dx.doi.org/10.1039/d3sc02492j | DOI Listing |
Proteins have proven to be useful agents in a variety of fields, from serving as potent therapeutics to enabling complex catalysis for chemical manufacture. However, they remain difficult to design and are instead typically selected for using extensive screens or directed evolution. Recent developments in protein large language models have enabled fast generation of diverse protein sequences in unexplored regions of protein space predicted to fold into varied structures, bind relevant targets, and catalyze novel reactions.
View Article and Find Full Text PDFInsulin degrading enzyme (IDE) is a dimeric 110 kDa M16A zinc metalloprotease that degrades amyloidogenic peptides diverse in shape and sequence, including insulin, amylin, and amyloid-β, to prevent toxic amyloid fibril formation. IDE has a hollow catalytic chamber formed by four homologous subdomains organized into two ∼55 kDa N- and C-domains (IDE-N and IDE-C, respectively), in which peptides bind, unfold, and are repositioned for proteolysis. IDE is known to transition between a closed state, poised for catalysis, and an open state, able to release cleavage products and bind new substrate.
View Article and Find Full Text PDFUnlabelled: The rat offers a uniquely valuable animal model in neuroscience, but we currently lack an individual-level understanding of the in vivo rat brain network. Here, leveraging longitudinal measures of cortical magnetization transfer ratio (MTR) from in vivo neuroimaging between postnatal days 20 (weanling) and 290 (mid-adulthood), we design and implement a computational pipeline that captures the network of structural similarity (MIND, morphometric inverse divergence) between each of 53 distinct cortical areas. We first characterized the normative development of the network in a cohort of rats undergoing typical development (N=47), and then contrasted these findings with a cohort exposed to early life stress (ELS, N=40).
View Article and Find Full Text PDFRNA can serve as an enzyme, small molecule sensor, and vaccine, and it may have been a conduit for the origin of life. Despite these profound functions, RNA is thought to have quite limited molecular diversity. A pressing question, therefore, is whether RNA can adopt novel molecular states that enhance its function.
View Article and Find Full Text PDFJ Fluid Mech
December 2024
Université de Technologie de Compiègne, CNRS, Biomechanics and Bioengineering, Compiégne, France.
Capsules, which are potentially-active fluid droplets enclosed in a thin elastic membrane, experience large deformations when placed in suspension. The induced fluid-structure interaction stresses can potentially lead to rupture of the capsule membrane. While numerous experimental studies have focused on the rheological behavior of capsules until rupture, there remains a gap in understanding the evolution of their mechanical properties and the underlying mechanisms of damage and breakup under flow.
View Article and Find Full Text PDFEnter search terms and have AI summaries delivered each week - change queries or unsubscribe any time!