Discerning conformational dynamics and binding kinetics of GPCRs by F NMR.

Curr Opin Pharmacol

Chemistry Department, University of Toronto, CPS UTM, Davis Building, Rm 4052, 3359 Mississauga Rd North, Mississauga, Ontario, L5L 1C6, Canada.

Published: October 2023

F NMR provides a way of monitoring conformational dynamics of G-protein coupled receptors (GPCRs) from the perspective of an ensemble. While X-ray crystallography provides exquisitely resolved high-resolution structures of specific states, it generally does not recapitulate the true ensemble of functional states. Fluorine (F) NMR provides a highly sensitive spectroscopic window into the conformational ensemble, generally permitting the direct quantification of resolvable states. Moreover, straightforward T- and T-based relaxation experiments allow for the study of fluctuations within a given state and exchange between states, on timescales spanning nanoseconds to seconds. Conveniently, most biological systems are free of fluorine. Thus, via fluorinated amino acid analogues or thiol-reactive fluorinated tags, F or CF reporters can be site specifically incorporated into proteins of interest. In this review, fluorine labeling protocols and F NMR experiments will be presented, from the perspective of small molecule NMR (i.e. drug or small molecule interactions with receptors) or macromolecular NMR (i.e. conformational dynamics of receptors and receptor-G-protein complexes).

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http://dx.doi.org/10.1016/j.coph.2023.102377DOI Listing

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