sp. nov., a spore-forming lactic acid bacterium isolated from tree bark in Thailand.

Int J Syst Evol Microbiol

Department of Biochemistry and Microbiology, Faculty of Pharmaceutical Sciences, Chulalongkorn University, Bangkok 10330, Thailand.

Published: July 2023

A Gram-stain-positive, facultatively anaerobic and endospore-forming rod-shaped bacterium, designed strain CPB3-1, was isolated from tree bark. This homofermentative strain produced dl-lactic acid from glucose. It grew at 20-45 °C, pH 4.0-9.5 and in 0-3.0 % (w/v) NaCl. It contained -diaminopimelic acid in cell-wall peptidoglycan and had menaquinone with seven isoprene units (MK-7) as the predominant component. The major fatty acid was anteiso-C. The polar lipids were phosphatidylglycerol, diphosphatidylglycerol, an unknown phospholipid and an unknown lipid. Based on the results of 16S rRNA gene sequence analysis, strain CPB3-1 belonged to the genus and was closely related to DSM 11701 and BK117-1 (both 96.7 % similarity), NRIC 1133 and DSM 11697 (both 96.6 % similarity), and MK21-7, DSM 442, BK92 and GD201205 (all 95.8-96.5 % similarity). The draft genome of strain CPB3-1 contained 2 930 919 bps with 3117 coding genes. The DNA G+C content was 45.1 mol%. The digital DNA-DNA hybridization values between strain CPB3-1 and closely related type strains were 19.2-24.0 %. The average nucleotide identity (84.0-87.6 %) and average amino acid identity (66.5-76.3 %) values were lower than the cut-off values for species delineation. Strain CPB3-1 was clearly distinguished from related species based on its phenotypic and chemotaxonomic characteristics, 16S rRNA gene sequence similarity and the results of draft genome analysis. Therefore, the strain represents a novel species of the genus , for which the name sp. nov. is proposed. The type strain is CPB3-1 (=JCM 35082=TISTR 10004).

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Source
http://dx.doi.org/10.1099/ijsem.0.005993DOI Listing

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