Modeling the Correlation between and in an X-ray Crystal Structure Refinement.

bioRxiv

Division of Chemistry and Chemical Engineering 147-75, Howard Hughes Medical Institute, California Institute of Technology, 1200 E. California Blvd., Pasadena, CA 91125 USA.

Published: July 2023

We have examined how the refined -factor changes as a function of (the atomic number of a scatterer) at the sulfur site of the [4Fe:4S] cluster of the nitrogenase iron protein by refinement. A simple model is developed that quantitatively captures the observed relationship between and , based on a Gaussian electron density distribution with a constant electron density at the position of the scatterer. From this analysis, the fractional changes in and are found to be similar. The utility of -factor refinement to potentially distinguish atom types reflects the dependence of X-ray atomic scattering factors; the weaker dependence of electron atomic scattering factors on implies that distinctions between refined values of in an electron scattering structure will be less sensitive to the atomic identity of a scatterer than for the case with X-ray-diffraction. This behavior provides an example of the complementary information that can be extracted from different types of scattering studies.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC10350028PMC
http://dx.doi.org/10.1101/2023.07.04.547724DOI Listing

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