head blight (FHB) is one of the most prevalent wheat diseases, causing substantial yield losses and health risks. Efficient phenotyping of FHB is crucial for accelerating resistance breeding, but currently used methods are time-consuming and expensive. The present article suggests a noninvasive classification model for FHB severity estimation using red-green-blue (RGB) images, without requiring extensive preprocessing. The model accepts images taken from consumer-grade, low-cost RGB cameras and classifies the FHB severity into 6 ordinal levels. In addition, we introduce a novel dataset consisting of around 3,000 images from 3 different years (2020, 2021, and 2022) and 2 FHB severity assessments per image from independent raters. We used a pretrained EfficientNet (size b0), redesigned as a regression model. The results demonstrate that the interrater reliability (Cohen's kappa, ) is substantially lower than the achieved individual network-to-rater results, e.g., 0.68 and 0.76 for the data captured in 2020, respectively. The model shows a generalization effect when trained with data from multiple years and tested on data from an independent year. Thus, using the images from 2020 and 2021 for training and 2022 for testing, we improved the score by 0.14, the accuracy by 0.11, by 0.12, and reduced the root mean squared error by 0.5 compared to the best network trained only on a single year's data. The proposed lightweight model and methods could be deployed on mobile devices to automatically and objectively assess FHB severity with images from low-cost RGB cameras. The source code and the dataset are available at https://github.com/cvims/FHB_classification.
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http://dx.doi.org/10.34133/plantphenomics.0068 | DOI Listing |
Breed Sci
September 2024
Crop Research Laboratories, Sapporo Breweries Ltd., 37-1 Nittakizaki, Ota, Gunma 370-0321, Japan.
Hokkaido-specific malting barley varieties have been developed to improve the grain yield, disease resistance, malting quality, and brewing quality. In this report we describe the breeding and evaluation of brewing quality of a hulled two-row malting barley ( L.) variety 'Satuiku 5 go' lacking lipoxygenase-1 (LOX-1-less).
View Article and Find Full Text PDFPathogens
January 2025
Plant Omics Laboratory, Department of Biotechnology, Faculty of Natural Sciences, University of the Western Cape, Robert Sobukwe Road, Bellville 7535, South Africa.
head blight (FHB) is a major disease affecting wheat production worldwide, caused by multiple species. In this study, seven strains were isolated from wheat fields across the Western Cape region of South Africa and identified through phylogenetic analysis. The strains were classified into three species complexes: the species complex (FGSC), species complex (FIESC), and species complex (FTSC).
View Article and Find Full Text PDFJ Fungi (Basel)
January 2025
Instituto de Biología Funcional y Biotecnología (BIOLAB)-INBIOTEC-CONICET-CICBA, Facultad de Agronomía, Universidad Nacional del Centro de la Provincia de Buenos Aires, Av. República de Italia # 780, Azul 7300, BA, Argentina.
Cereal crops are affected by one of the most devastating diseases worldwide, known as Fusarium head blight (FHB), with being the most isolated causal pathogen. Another species associated with this disease is . This species has been considered a relatively weak pathogen compared to , but its importance has increased due to its occurrence in cereal grains worldwide.
View Article and Find Full Text PDFNat Genet
January 2025
The Applied Plant Genomics Laboratory of Crop Genomics and Bioinformatics Centre and State Key Laboratory of Crop Genetics & Germplasm Enhancement and Utilization, Nanjing Agricultural University, Nanjing, China.
Ambiguity about whether the histidine-rich calcium-binding protein-coding gene (His) or the pore-forming toxin-like gene (PFT) or both are responsible for Fusarium head blight (FHB) resistance conferred by the Fhb1 quantitative trait locus hinders progress toward elucidating Fhb1 resistance mechanisms. Here, with a series of developed lines with or without PFT but all possessing His and five His-carrying PFT mutant lines created via gene editing, we show that PFT does not confer FHB resistance and that the His resistance effect does not require PFT in the tested conditions. We also show that PFT mutations are not associated with morphological and phenological characteristics that often affect FHB severity.
View Article and Find Full Text PDFEnviron Microbiome
January 2025
Department of Plant Breeding, Swedish University of Agricultural Sciences, Alnarp, Sweden.
Background: Fusarium head blight (FHB) is a major disease affecting cereal crops including wheat, barley, rye, oats and maize. Its predominant causal agent is the ascomycete fungus Fusarium graminearum, which infects the spikes and thereby reduces grain yield and quality. The frequency and severity of FHB epidemics has increased in recent years, threatening global food security.
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