AI Article Synopsis

  • Traditional hands-on training in bioinformatics often struggles with resource-intensive requirements and management issues for instructors, especially in virtual settings where tracking student progress is challenging.
  • The Training Infrastructure-as-a-Service (TIaaS) was developed to provide user-friendly, efficient training resources specifically for Galaxy-based courses, allowing event organizers to allocate dedicated resources for smoother operations and quick job completion.
  • TIaaS enhances the training experience for both instructors and students by offering a dashboard for monitoring progress and ensuring students can seamlessly continue using Galaxy tools even after the training, with significant usage reported over the past 60 months.

Article Abstract

Background: Hands-on training, whether in bioinformatics or other domains, often requires significant technical resources and knowledge to set up and run. Instructors must have access to powerful compute infrastructure that can support resource-intensive jobs running efficiently. Often this is achieved using a private server where there is no contention for the queue. However, this places a significant prerequisite knowledge or labor barrier for instructors, who must spend time coordinating deployment and management of compute resources. Furthermore, with the increase of virtual and hybrid teaching, where learners are located in separate physical locations, it is difficult to track student progress as efficiently as during in-person courses.

Findings: Originally developed by Galaxy Europe and the Gallantries project, together with the Galaxy community, we have created Training Infrastructure-as-a-Service (TIaaS), aimed at providing user-friendly training infrastructure to the global training community. TIaaS provides dedicated training resources for Galaxy-based courses and events. Event organizers register their course, after which trainees are transparently placed in a private queue on the compute infrastructure, which ensures jobs complete quickly, even when the main queue is experiencing high wait times. A built-in dashboard allows instructors to monitor student progress.

Conclusions: TIaaS provides a significant improvement for instructors and learners, as well as infrastructure administrators. The instructor dashboard makes remote events not only possible but also easy. Students experience continuity of learning, as all training happens on Galaxy, which they can continue to use after the event. In the past 60 months, 504 training events with over 24,000 learners have used this infrastructure for Galaxy training.

Download full-text PDF

Source
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC10316688PMC
http://dx.doi.org/10.1093/gigascience/giad048DOI Listing

Publication Analysis

Top Keywords

training
9
training infrastructure
8
compute infrastructure
8
infrastructure
5
infrastructure service
4
service background
4
background hands-on
4
hands-on training
4
training bioinformatics
4
bioinformatics domains
4

Similar Publications

Want AI Summaries of new PubMed Abstracts delivered to your In-box?

Enter search terms and have AI summaries delivered each week - change queries or unsubscribe any time!