Small-molecule-based amorphous organic semiconductors (OSCs) are essential components of organic photovoltaics and organic light-emitting diodes. The charge carrier mobility of these materials is an integral and limiting factor in regard to their performance. Integrated computational models for the hole mobility, taking into account structural disorder in systems of several thousand molecules, have been the object of research in the past. Due to static and dynamic contributions to the total structural disorder, efficient strategies to sample the charge transfer parameters become necessary. In this paper, we investigate the impact of structural disorder in amorphous OSCs on the transfer parameters and charge mobilities in different materials. We present a sampling strategy for incorporating static and dynamic structural disorder which are based on QM/MM methods using semiempirical Hamiltonians and extensive MD sampling. We show how the disorder affects the distributions of HOMO energies and intermolecular couplings and validate the results using kinetic Monte Carlo simulations of the mobility. We find that dynamic disorder causes an order of magnitude difference in the calculated mobility between morphologies of the same material. Our method allows the sampling of disorder in HOMO energies and couplings, and the statistical analysis enables us to characterize the relevant time scales on which charge transfer occurs in these complex materials. The findings presented here shed light on the interplay of the fluctuating amorphous matrix with charge carrier transport and aid in the development of a better understanding of these complex processes.
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http://dx.doi.org/10.1021/acs.jctc.3c00385 | DOI Listing |
Proc Natl Acad Sci U S A
January 2025
Department of Chemistry and Biochemistry, The Ohio State University, Columbus, OH 43210.
The homo-dodecameric ring-shaped RNA binding attenuation protein (TRAP) from binds up to twelve tryptophan ligands (Trp) and becomes activated to bind a specific sequence in the 5' leader region of the operon mRNA, thereby downregulating biosynthesis of Trp. Thermodynamic measurements of Trp binding have revealed a range of cooperative behavior for different TRAP variants, even if the averaged apparent affinities for Trp have been found to be similar. Proximity between the ligand binding sites, and the ligand-coupled disorder-to-order transition has implicated nearest-neighbor interactions in cooperativity.
View Article and Find Full Text PDFProc Natl Acad Sci U S A
January 2025
Innovative Genomics Institute, University of California, Berkeley, CA 94720.
The widespread application of genome editing to treat and cure disease requires the delivery of genome editors into the nucleus of target cells. Enveloped delivery vehicles (EDVs) are engineered virally derived particles capable of packaging and delivering CRISPR-Cas9 ribonucleoproteins (RNPs). However, the presence of lentiviral genome encapsulation and replication proteins in EDVs has obscured the underlying delivery mechanism and precluded particle optimization.
View Article and Find Full Text PDFPLoS Pathog
January 2025
Department of Veterinary Microbiology and Pathology, Washington State University, Pullman, Washington, United States of America.
Host-pathogen interactions represent a dynamic evolutionary process, wherein both hosts and pathogens continuously develop complex mechanisms to outmaneuver each other. Borrelia burgdorferi, the Lyme disease pathogen, has evolved an intricate antigenic variation mechanism to evade the host immune response, enabling its dissemination, persistence, and pathogenicity. Despite the discovery of this mechanism over two decades ago, the precise processes, genetic elements, and proteins involved in this system remain largely unknown.
View Article and Find Full Text PDFACS Infect Dis
January 2025
Department of Microbiology, Immunology and Pathology, Colorado State University, Fort Collins, Colorado 80523, United States.
Developing new classes of drugs that are active against infections caused by is a priority for treating and managing this deadly disease. Here, we describe screening a small library of 20 DNA gyrase inhibitors and identifying new lead compounds. Three structurally diverse analogues were identified with minimal inhibitory concentrations of 0.
View Article and Find Full Text PDFPLoS One
January 2025
Department of Structural Heart Disease, Cardiovascular Institute and Fuwai Hospital, National Center for Cardiovascular Diseases, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing, China.
Background: Assessing the endothelialization of occlusive devices noninvasively remains a challenge. Cardiac computed tomography angiography (CTA) can be employed to evaluate device endothelialization based on contrast uptake within the occluder.
Objective: This study examined device endothelialization using cardiac CTA and investigated the pathological associations.
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