Identification of Exosome-Related Genes Associated with Prognosis and Immune Infiltration Features in Head-Neck Squamous Cell Carcinoma.

Biomolecules

Department of Oral and Maxillofacial-Head and Neck Oncology, Shanghai Ninth People's Hospital, Shanghai Jiao Tong University School of Medicine, Shanghai 200011, China.

Published: June 2023

AI Article Synopsis

  • The study investigates the role of exosome-related genes (ERGs) in head-neck squamous cell cancer (HNSCC), revealing their potential significance in understanding the cancer's immunosuppressive nature.
  • Researchers identified two patient subtypes based on ERG expression and developed a risk prediction model using seven genes, linking high-risk patients to poor survival and suppressed immune function.
  • Key genes HPRT1 and PYGL were confirmed as independent prognostic factors, associated with immunosuppression and tumor microenvironment alterations in HNSCC, supported by various analyses and immunohistochemistry results.

Article Abstract

The highly immunosuppressive nature of head-neck squamous cell cancer (HNSCC) is not fully understood. Exosomes play crucial roles in the communication between cancer and non-cancer cells, but the clinical significance of the expression of exosome-related genes (ERGs) remains unclear in HNSCC. This study aimed to establish an HNSCC-ERGs model by using mass spectrometry (MS)-based label-free quantitative proteomics in combination with the TCGA primary HNSCC dataset. The study managed to classify the HNSCC patients into two subtypes based on the expression level of prognostic ERGs, which showed significant differences in prognosis and immune infiltration. LASSO regression algorithm was used to establish a risk prediction model based on seven risky genes (PYGL, ACTN2, TSPAN15, EXT2, PLAU, ITGA5), and the high-risk group was associated with poor survival prognosis and suppressive immune status. HPRT1 and PYGL were found to be independent prognostic factors through univariate and multivariate Cox regression analyses. Immune and ssGSEA analysis revealed that HPRT1 and PYGL were significantly related to immunosuppression, immune response, and critical signaling transduction pathways in HNSCC. Immunohistochemistry results further validated the expression level, clinical value, and immunosuppressive function of HPRT1 and PYGL in HNSCC patients. In conclusion, this study established molecular subtypes and a prediction risk model based on the ERGs. Furthermore, the findings suggested that HPRT1 and PYGL might play critical roles in reshaping the tumor microenvironment.

Download full-text PDF

Source
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC10296256PMC
http://dx.doi.org/10.3390/biom13060958DOI Listing

Publication Analysis

Top Keywords

hprt1 pygl
16
exosome-related genes
8
prognosis immune
8
immune infiltration
8
head-neck squamous
8
squamous cell
8
hnscc patients
8
expression level
8
model based
8
hnscc
6

Similar Publications

Article Synopsis
  • The study investigates the role of exosome-related genes (ERGs) in head-neck squamous cell cancer (HNSCC), revealing their potential significance in understanding the cancer's immunosuppressive nature.
  • Researchers identified two patient subtypes based on ERG expression and developed a risk prediction model using seven genes, linking high-risk patients to poor survival and suppressed immune function.
  • Key genes HPRT1 and PYGL were confirmed as independent prognostic factors, associated with immunosuppression and tumor microenvironment alterations in HNSCC, supported by various analyses and immunohistochemistry results.
View Article and Find Full Text PDF

A novel metabolic-related gene signature for predicting clinical prognosis and immune microenvironment in head and neck squamous cell carcinoma.

Exp Cell Res

July 2023

Department of Radiation Oncology, Affiliated Cancer Hospital & Institute of Guangzhou Medical University, Guangzhou, China; Guangzhou Medical University, Guangzhou, China. Electronic address:

Objectives: Metabolic reprogramming is not only an essential hallmark in the progression of head and neck squamous cell carcinoma (HNSCC), but also an important regulator of cancer cell adaptation to tumor microenvironment (TME). However, the potential mechanism of metabolic reprogramming in TME of HNSCC is still unknown.

Methods: The head and neck squamous cell carcinoma with survival information were obtained the Cancer Genome Atlas (TCGA) and Gene Expression Omnibus (GEO) databases.

View Article and Find Full Text PDF

Objective: Head and neck squamous cell carcinoma (HNSCC) is one of the worst-prognosis malignant tumors. This study used bioinformatic analysis of the transcriptome sequencing data of HNSCC and the patients' survival and clinical data to construct a prediction signature of glycolysis-related genes as the prognostic risk markers.

Methods: Gene expression profile data about HNSCC tissues ( = 498) and normal tissues in the head and neck ( = 44) were got from The Cancer Genome Atlas (TCGA), as well as patients' survival and clinical data.

View Article and Find Full Text PDF

Want AI Summaries of new PubMed Abstracts delivered to your In-box?

Enter search terms and have AI summaries delivered each week - change queries or unsubscribe any time!