In this investigation, we report the effect on the microscopic dynamics and interactions of the cytokine interferon gamma (IFN-γ) and antibodies to IFN-γ (anti-IFN-γ) and to the interferon gamma receptor 1 (anti-IFNGR1) prepared in highly dilute (HD) solutions of initial proteins. THz spectroscopy measurements have been conducted as a means to analyze and characterize the collective dynamics of the HD samples. MD simulations have also been performed that have successfully reproduced the observed signatures from experimental measurement. Using this joint experimental-computational approach we determine that the HD process associated with the preparation of the highly diluted samples used in this investigation induces a dynamical transition that results in collective changes in the hydrogen-bond network of the solvent. The dynamical transition in the solvent is triggered by changes in the mobility and hydrogen-bonding interactions of the surface molecules in the HD samples and is characterized by dynamical heterogeneity. We have uncovered that the reorganization of the sample surface residue dynamics at the solvent-protein interface leads to both structural and kinetic heterogeneous dynamics that ultimately create interactions that enhance the binding probability of the antigen binding site. Our results indicate that the modified interfacial dynamics of anti-IFN-γ and anti-IFGNR1 that we probe experimentally are directly associated with alterations in the complementarity regions of the distinct antibodies that designate both antigen-antibody affinity and recognition.
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http://dx.doi.org/10.3389/fchem.2023.1131935 | DOI Listing |
Appl Spectrosc
December 2024
School of Earth Sciences and Resources, China University of Geosciences (Beijing), Beijing, China.
The optical and dielectric properties of opals with different water contents were investigated using terahertz time-domain spectroscopy. The refractive indices and absorption coefficients showed different trends due to the different water contents. The effective medium theory was used to extract the intrinsic dielectric permittivity of opal from opal-polytetrafluoroethylene mixtures.
View Article and Find Full Text PDFJ Chem Phys
December 2024
Laboratório de Espectroscopia Molecular, Departamento de Química Fundamental, Instituto de Química, Universidade de São Paulo, 05513-970 São Paulo, SP, Brazil.
Molecular dynamics (MD) simulation is used to study the intermolecular dynamics in the THz frequency range of the ionic liquid 1-ethyl-3-methylimidazolium bis(fluorosulfonyl)imide, [C2C1im][FSI]. Non-polarizable and polarizable models for classical MD simulation are compared using as quality criteria ab initio molecular dynamics (AIMD) and experimental data from far-infrared (FIR) spectroscopy and previously published data of inelastic x-ray scattering (IXS). According to data from IXS spectroscopy, incorporating polarization in the classical MD simulation has relatively little effect on the dispersion curve (excitation frequency vs wavevector) for longitudinal acoustic modes.
View Article and Find Full Text PDFAdv Mater
December 2024
Key Laboratory of Advanced Materials (MOE), School of Materials Science and Engineering, Tsinghua University, Beijing, 100084, China.
The orbital Hall effect originating from light materials with weak spin-orbit coupling, has attracted considerable interest in spintronic applications. Recent studies demonstrate that orbital currents can be generated from charge currents through the orbital Hall effect in ferromagnetic materials. However, the generation of orbital currents in antiferromagnets has so far been elusive.
View Article and Find Full Text PDFJ Chem Phys
December 2024
Department of Chemistry, University of Graz, Heinrichstraße 28/IV, 8010 Graz, Austria.
Intermolecular vibrations are extremely challenging to describe but are the most crucial part for determining entropy and hence free energies and enable, for instance, the distinction between different crystal-packing arrangements of the same molecule via THz spectroscopy. Herein, we introduce a benchmark dataset-V30-containing 30 small molecular dimers with intermolecular interactions ranging from exclusively van der Waals dispersion to systems with hydrogen bonds. All the calculations are performed with the gold standard of quantum chemistry CCSD(T).
View Article and Find Full Text PDFMaterials (Basel)
December 2024
Department of Materials Science, University of Tsukuba, Tsukuba 305-8573, Ibaraki, Japan.
Amber is a fragile (in Angell's classification) natural glass that has performed maturation processes over geological time. The terahertz dynamics of Baltic amber that was about 40 million years old were studied by terahertz time-domain spectroscopy (THz-TDS) in the frequency range of 0.2 and 6.
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