AI Article Synopsis

  • Human nasal microbiota consist of various species that are generally linked to health, with certain species being more prevalent across different populations.
  • A study examined 87 strains from Botswana and the USA, revealing that while some strains were geographically bounded, many others had wider distributions, and overall genomic structures were similar across species.
  • The research found that these strains show little metabolic variation, with an exception in a USA strain lacking certain sulfate reduction genes, suggesting that coexisting strains might not effectively utilize distinct metabolic roles.

Article Abstract

species are globally ubiquitous in human nasal microbiota across the lifespan. Moreover, nasal microbiota profiles typified by higher relative abundances of are often positively associated with health. Among the most common human nasal species are , , and . To gain insight into the functions of these four species, we identified genomic, phylogenomic, and pangenomic properties and estimated the metabolic capabilities of 87 distinct human nasal strain genomes: 31 from Botswana and 56 from the USA. had geographically distinct clades consistent with localized strain circulation, whereas some strains from the other species had wide geographic distribution spanning Africa and North America. All species had similar genomic and pangenomic structures. Gene clusters assigned to all COG metabolic categories were overrepresented in the persistent versus accessory genome of each species indicating limited strain-level variability in metabolic capacity. Based on prevalence data, at least two species likely coexist in the nasal microbiota of 82% of adults. So, it was surprising that core metabolic capabilities were highly conserved among the four species indicating limited species-level metabolic variation. Strikingly, strains in the USA clade of lacked genes for assimilatory sulfate reduction present in most of the strains in the Botswana clade and in the other studied species, indicating a recent, geographically related loss of assimilatory sulfate reduction. Overall, the minimal species and strain variability in metabolic capacity implies coexisting strains might have limited ability to occupy distinct metabolic niches.

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Source
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC10274666PMC
http://dx.doi.org/10.1101/2023.06.05.543719DOI Listing

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