Unlabelled: Wheat is an essential food crop and its high and stable yield is suffering from great challenges due to the limitations of current breeding technology and various stresses. Accelerating molecularly assisted stress-resistance breeding is critical. Through a meta-analysis of published loci in wheat over the last two decades, we selected 60 loci with main breeding objectives, high heritability, and reliable genotyping, such as stress resistance, yield, plant height, and resistance to spike germination. Then, using genotyping by target sequencing (GBTS) technology, we developed a liquid phase chip based on 101 functional or closely linked markers. The genotyping of 42 loci was confirmed in an extensive collection of Chinese wheat cultivars, indicating that the chip can be used in molecular-assisted selection (MAS) for target breeding goals. Besides, we can perform the preliminary parentage analysis with the genotype data. The most significant contribution of this work lies in translating a large number of molecular markers into a viable chip and providing reliable genotypes. Breeders can quickly screen germplasm resources, parental breeding materials, and intermediate materials for the presence of excellent allelic variants using the genotyping data by this chip, which is high throughput, convenient, reliable, and cost-efficient.
Supplementary Information: The online version contains supplementary material available at 10.1007/s11032-023-01359-3.
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http://dx.doi.org/10.1007/s11032-023-01359-3 | DOI Listing |
Theor Appl Genet
January 2025
Crop Research Institute, Gansu Academy of Agricultural Sciences, Lanzhou, 730070, China.
Int J Mol Sci
November 2024
College of Grassland Agriculture, Northwest A&F University, Yangling, Xianyang 712100, China.
Tong sheep, known for their superior meat quality and disease resilience, face breeding challenges due to low prolificacy, unlike Hu sheep, which exhibit higher fertility and growth rates. This study identified over 700,000 genetic variants between these breeds through pooled whole-genome sequencing. Functional analysis reveals key differences in pathways related to fat metabolism, insulin signaling, and cell cycle regulation.
View Article and Find Full Text PDFFront Plant Sci
November 2024
Crops Research Institute, Anhui Academy of Agricultural Sciences, Hefei, Anhui, China.
Int J Biol Macromol
January 2025
State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, College of Agriculture, Guangxi University, Nanning 530004, China. Electronic address:
Fruit appearance of eggplant is a key commercial trait, and the precise selection of new varieties with diverse aesthetics aligns with current breeding objectives. However, functional genomics research in eggplant remains underdeveloped. Here, we assembled the first telomere-to-telomere (T2T) eggplant genome, as well as chloroplast and mitochondrial genomes for the inbred line 'NO211'.
View Article and Find Full Text PDFTheor Appl Genet
October 2024
College of Grassland Science and Technology, Sichuan Agricultural University, Chengdu, 611130, China.
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