Meta-analysis of single-cell and single-nucleus transcriptomics reveals kidney cell type consensus signatures.

Sci Data

Université de Paris Cité, Imagine Institute, Laboratory of Hereditary Kidney Diseases, Paris, INSERM UMR 1163, F-75015, France.

Published: June 2023

While the amount of studies involving single-cell or single-nucleus RNA-sequencing technologies grows exponentially within the biomedical research area, the kidney field requires reference transcriptomic signatures to allocate each cluster its matching cell type. The present meta-analysis of 39 previously published datasets, from 7 independent studies, involving healthy human adult kidney samples, offers a set of 24 distinct consensus kidney cell type signatures. The use of these signatures may help to assure the reliability of cell type identification in future studies involving single-cell and single-nucleus transcriptomics while improving the reproducibility in cell type allocation.

Download full-text PDF

Source
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC10244446PMC
http://dx.doi.org/10.1038/s41597-023-02209-9DOI Listing

Publication Analysis

Top Keywords

cell type
20
single-cell single-nucleus
12
studies involving
12
single-nucleus transcriptomics
8
kidney cell
8
involving single-cell
8
cell
5
type
5
meta-analysis single-cell
4
transcriptomics reveals
4

Similar Publications

Want AI Summaries of new PubMed Abstracts delivered to your In-box?

Enter search terms and have AI summaries delivered each week - change queries or unsubscribe any time!