In this contribution, we employ a density matrix-based optimization procedure to obtain customized basis functions to describe chains of rotating water molecules in interaction regimes associated with different intermolecular distances. This procedure is shown to yield a very compact basis with a clear truncation criterion based on the population of the single particle basis functions. For the water trimer, we discuss the convergence behavior of several properties and show it to be superior when compared to an energy-based truncated basis. It is demonstrated that the optimized basis reduces the necessary number of basis functions by at least an order of magnitude. Finally, the optimization procedure is employed to study larger chains of up to ten water molecules. The formation of hydrogen bonds as well as its impact on the net polarization of the chain is discussed.
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http://dx.doi.org/10.1063/5.0154201 | DOI Listing |
Chem Commun (Camb)
January 2025
Molecular Science and Biomedicine Laboratory (MBL), State Key Laboratory of Chemo/Bio-Sensing and Chemometrics, College of Chemistry and Chemical Engineering, Aptamer Engineering Center of Hunan Province, Hunan Provincial Key Laboratory of Biomacromolecular Chemical Biology, Hunan University, Changsha, 410082, People's Republic of China.
The unique insertion capability of Ag into cytosine-cytosine (C-Ag-C) mismatch-base pairs enables precise fabrication of DNA-trapped silver nanoclusters (DNA-AgNCs) through varying the DNA sequences, thereby offering precise assembly of DNA-AgNCs and demonstrating great fluorescence applications. However, most of the DNA-AgNC-based fluorescence sensors have a single output signal. Herein, we developed a dimerized DNA-AgNC system through C-Ag-C connection at the 3'-end of a designed DNA.
View Article and Find Full Text PDFAdv Sci (Weinh)
January 2025
Université Paris-Saclay, CNRS, Institut de Chimie Moléculaire et des Matériaux d'Orsay, Orsay, 91400, France.
To efficiently capture, activate, and transform small molecules, metalloenzymes have evolved to integrate a well-organized pocket around the active metal center. Within this cavity, second coordination sphere functionalities are precisely positioned to optimize the rate, selectivity, and energy cost of catalytic reactions. Inspired by this strategy, an artificial distal pocket defined by a preorganized 3D strap is introduced on an iron-porphyrin catalyst (sc-Fe) for the CO-to-CO electrocatalytic reduction.
View Article and Find Full Text PDFFront Plant Sci
January 2025
Microbial Biotechnology and Bioactive Molecules Laboratory, Sciences and Technology Faculty, Sidi Mohamed Ben Abdellah University, Fez, Morocco.
With climate change, the frequency of regions experiencing water scarcity is increasing annually, posing a significant challenge to crop yield. Barley, a staple crop consumed and cultivated globally, is particularly susceptible to the detrimental effects of drought stress, leading to reduced yield production. Water scarcity adversely affects multiple aspects of barley growth, including seed germination, biomass production, shoot and root characteristics, water and osmotic status, photosynthesis, and induces oxidative stress, resulting in considerable losses in grain yield and its components.
View Article and Find Full Text PDFChem Commun (Camb)
January 2025
Anhui Laboratory of Molecule-Based Materials, Key Laboratory of Functional Molecular Solids, Ministry of Education, School of Chemistry and Materials Science, Anhui Normal University, Wuhu 241002, China.
The production of high molecular weight polyethylene particles in aqueous environments has received considerable attention, yet reports on the formation of polyethylene oil within water remain scarce. Herein, we present findings that demonstrate the oligomerization of ethylene by certain iminopyridyl Pd(II) catalysts in water, resulting in the synthesis of hyperbranched ethylene oligomers. It is worth highlighting the intriguing observation that these catalysts exhibited a remarkable catalytic longevity in aqueous medium and ultimately facilitated the generation of a substantial liquid polyolefin phase from water.
View Article and Find Full Text PDFPrep Biochem Biotechnol
January 2025
Department of Biotechnology, Kalasalingam Academy of Research and Education, Krishnankovil, Tamil Nadu, India.
Halophilic bacteria are promising candidates for biofuel production because of their efficient cellulose degradation. Their cellulases exhibit high activity, even in the presence of inhibitors and under extreme conditions, making them ideal for biorefinery applications. In this study, we isolated a strain of (Kadal6) from decomposed cotton cloth on a Rameshwaram seashore.
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