Adaptations occur at many levels, for example, from DNA sequence of regulatory elements and cellular homeostatic systems to organismal physiology and behaviour (Mayr, 1997). Established adaptations are maintained by purifying and stabilizing selection. Students of animal diversity tend to focus on higher order traits, anatomy, physiology, organismal function and interactions. The core cellular and metabolic systems of metazoans evolved early in their history and are assumed to be rather similar between groups. The housekeeping functions and core metabolic functions of cells are generally considered relatively static, especially among closely related species. The extent to which evolution shapes core cellular metabolism and physiology in animals is largely unexplored. Ecological opportunities or strong positive selection can alter basal metabolic rate, activity levels and life-history traits (e.g., life span, age of maturity, offspring number) and potentially lead to divergence in core cellular and metabolic trait systems (Norin & Metcalfe, 2019; Speakman, 2005). Furthermore, systems under stabilizing selection can also change. Developmental systems of related species may produce the same phenotype or structure, but experience drift that can alter connections and even lead to turnover of cogs in the system (True & Haag, 2001). Are the cellular functions of animals highly constrained, subject to cellular system drift or affected by positive selection? This was tackled by a new study by Kateryna Gaertner and colleagues in a From the Cover manuscript in this issue of Molecular Ecology (Gaertner et al., 2022), using fibroblasts from the closely related but ecologically distinct brown and mountain hares.
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http://dx.doi.org/10.1111/mec.17030 | DOI Listing |
Commun Biol
January 2025
Center for Research on Genomics and Global Health, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, 20892, USA.
Single cell studies have transformed our understanding of cellular heterogeneity in disease but the need for fresh starting material can be an obstacle, especially in the context of international multicenter studies and archived tissue. We developed a protocol to obtain high-quality cells and nuclei from dissected human skeletal muscle archived in the preservative Allprotect® Tissue Reagent. After fluorescent imaging microscopy confirmed intact nuclei, we performed four protocol variations that compared sequencing metrics between cells and nuclei enriched by either filtering or flow cytometry sorting.
View Article and Find Full Text PDFJ Immunother Cancer
January 2025
National Translational Science Center for Molecular Medicine & Department of Cell Biology, Fourth Military Medical University, Xi'an, Shaanxi, China
Background: Clear cell renal cell carcinoma (ccRCC) is the most common histologic type of RCC. However, the spatial and functional heterogeneity of immunosuppressive cells and the mechanisms by which their interactions promote immunosuppression in the ccRCC have not been thoroughly investigated.
Methods: To further investigate the cellular and regional heterogeneity of ccRCC, we analyzed single-cell and spatial transcriptome RNA sequencing data from four patients, which were obtained from samples from multiple regions, including the tumor core, tumor-normal interface, and distal normal tissue.
Talanta
December 2024
School of Food and Biological Engineering, Jiangsu University, Zhenjiang 212013, PR China; College of Ocean Food and Biological Engineering, Jimei University, Xiamen 361021, PR China. Electronic address:
Staphylococcus aureus (S. aureus) has been identified as a indicator of food contamination. In this study, a sensitive and accurate biosensor strategy for S.
View Article and Find Full Text PDFStem Cell Rev Rep
January 2025
Department of Biosciences and Bioengineering, Indian Institute of Technology Guwahati, Guwahati, Assam, India.
Background: Undifferentiated embryonic cell transcription factor 1 (UTF1) is predominantly expressed in pluripotent stem cells and plays a vital role in embryonic development and pluripotency maintenance. Despite its established importance in murine models, the role of UTF1 on human induced pluripotent stem cells (iPSCs) has not been comprehensively studied.
Methods: This study utilized CRISPR/Cas9 gene editing to create UTF1 knockout in human fibroblasts and iPSCs.
Biochemistry
January 2025
Molecular Biophysics Laboratory, Department of Biological Sciences, Indian Institute of Science Education and Research, Bhopal 462066, India.
The mitochondrial outer membrane (OMM) β-barrel proteins link the mitochondrion with the cytosol, endoplasmic reticulum, and other cellular membranes, establishing cellular homeostasis. Their active insertion and assembly in the outer mitochondrial membrane is achieved in an energy-independent yet highly effective manner by the Sorting and Assembly Machinery (SAM) of the OMM. The core SAM constituent is the 16-stranded transmembrane β-barrel Sam50.
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