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Characterization of Two Mitogenomes of (Anura: Hylidae), with Phylogenetic Relationships and Selection Pressure Analyses of Hylidae. | LitMetric

AI Article Synopsis

  • The study focuses on the Anura: Hylidae frogs, which are native to China and found in various provinces, highlighting their genetic study through sequencing their mitogenomes.
  • Two mitogenomes were analyzed from samples collected in Guangxi and Zhejiang, revealing the typical arrangement of mitochondrial genes and allowing for phylogenetic relationships to be established with other Hylidae species.
  • The findings suggest a close relationship between this clade and others, with indications of positive selection in specific proteins, possibly linked to historical cold stress experiences, although further research is needed to confirm this hypothesis.*

Article Abstract

(Anura: Hylidae) is endemic to China and is distributed across Anhui, Zhejiang, Fujian, Guangdong, Guangxi, Hunan, and Guizhou provinces. The mitogenomes of from two different sites (Jinxiu, Guangxi, and Wencheng, Zhejiang) were sequenced. Phylogenetic analyses were conducted, including 38 mitogenomes of Hylidae from the NCBI database, and assessed the phylogenetic relationship of within the analyzed dataset. Two mitogenomes of showed the typical mitochondrial gene arrangement with 13 protein-coding genes (PCGs), two ribosomal RNA genes (12S rRNA and 16S rRNA), 22 transfer RNA (tRNA) genes, and one non-coding control region (D-loop). The lengths of the 12S rRNA and 16S rRNA genes from both samples (Jinxiu and Wencheng) were 933 bp and 1604 bp, respectively. The genetic distance (-distance transformed into percent) on the basis of the mitogenomes (excluding the control region) of the two samples was calculated as 4.4%. showed a close phylogenetic relationship with the clade of ( + ), which was supported by ML and BI analyses. In the branch-site model, five positive selection sites were found in the clade of and : Cytb protein (at position 316), ND3 protein (at position 85), and ND5 protein (at position 400) have one site, respectively, and two sites in ND4 protein (at positions 47 and 200). Based on the results, we hypothesized that the positive selection of and was due to their experience of cold stress in historical events, but more evidence is needed to support this conclusion.

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Source
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC10215353PMC
http://dx.doi.org/10.3390/ani13101593DOI Listing

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