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The acquisition of Co by the corrin component of vitamin B follows one of two distinct pathways, referred to as early or late Co insertion. The late insertion pathway exploits a Co metallochaperone (CobW) from the COG0523 family of G3E GTPases, while the early insertion pathway does not. This provides an opportunity to contrast the thermodynamics of metalation in a metallochaperone-requiring and a metallochaperone-independent pathway. In the metallochaperone-independent route, sirohydrochlorin (SHC) associates with the CbiK chelatase to form Co-SHC. Co-buffered enzymatic assays indicate that SHC binding enhances the thermodynamic gradient for Co transfer from the cytosol to CbiK. In the metallochaperone-dependent pathway, hydrogenobyrinic acid -diamide (HBAD) associates with the CobNST chelatase to form Co-HBAD. Here, Co-buffered enzymatic assays indicate that Co transfer from the cytosol to HBAD-CobNST must somehow traverse a highly unfavorable thermodynamic gradient for Co binding. Notably, there is a favorable gradient for Co transfer from the cytosol to the MgGTP-CobW metallochaperone, but further transfer of Co from the GTP-bound metallochaperone to the HBAD-CobNST chelatase complex is thermodynamically unfavorable. However, after nucleotide hydrolysis, Co transfer from the chaperone to the chelatase complex is calculated to become favorable. These data reveal that the CobW metallochaperone can overcome an unfavorable thermodynamic gradient for Co transfer from the cytosol to the chelatase by coupling this process to GTP hydrolysis.
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http://dx.doi.org/10.1021/jacsau.3c00119 | DOI Listing |
Plant Sci
December 2024
College of Plant Science & Technology, Huazhong Agricultural University, Wuhan 430070, Hubei Province. Electronic address:
2-methylguanosine is an eukaryote-specific modified nucleoside in transfer RNAs, and mG10 is catalyzed by Trm11-Trm112 protein complex in eukaryotic tRNAs. Here, we show that loss-of-function mutation of the Arabidopsis Trm11 homolog AtTRM11 resulted in mG deficiency associated with disturbed ribosome assembly and overall transcriptome changes, including genes involved in flowering regulation and plant-pathogen interaction. The attrm11 mutant showed phenotypes of enlarged rosette leaves and early flowering, as well as enhanced resistance to Pseudomonas bacterial infection.
View Article and Find Full Text PDFIUBMB Life
January 2025
Department of Biology, Pomona College, Claremont, California, USA.
All life depends on accurate and efficient protein synthesis. The aminoacyl-tRNA synthetases (aaRSs) are a family of proteins that play an essential role in protein translation, as they catalyze the esterification reaction that charges a transfer RNA (tRNA) with its cognate amino acid. However, new domains added to the aaRSs over the course of evolution in eukaryotes confer novel functions unrelated to protein translation.
View Article and Find Full Text PDFMethods Mol Biol
December 2024
Université Côte d'Azur, CNRS, INSERM, Institut de Pharmacologie Moléculaire et Cellulaire, Valbonne, France.
Lipid transfer proteins (LTPs) are specialized proteins that convey specific lipids across the cytosol to regulate the lipid composition of organelles and the plasma membrane. Quantifying to which extent these LTPs recognize and transfer various lipid species and subspecies is of prime interest to define their cellular role(s). Here, we describe how to measure in vitro the relative affinity of Osh6p, a yeast phosphatidylserine (PS)/phosphatidylinositol 4-phosphate (PI(4)P) exchanger belonging to the oxysterol-binding protein(OSBP)-related protein (ORP) family, for PS and phosphoinositide subspecies.
View Article and Find Full Text PDFMethods Mol Biol
December 2024
Department of Biological Sciences, Vanderbilt University, Nashville, TN, USA.
Phospholipid flippases in the P4-ATPase family are essential for establishing membrane asymmetry. These ATP-powered pumps translocate specific lipids from the exofacial leaflet to the cytosolic leaflet of the plasma membrane, thereby concentrating substrate lipids, such as phosphatidylserine, in the cytosolic leaflet while non-substrate lipids populate the exofacial leaflet. Here, we describe a method for measuring P4-ATPase transport activity in the yeast plasma membrane by using flow cytometry to quantify the uptake of lipids derivatized with a fluorescent [7-nitro-2-1,3-benzoxadiazol-4-yl)amino] (NBD) group on a short (C6) fatty acyl chain.
View Article and Find Full Text PDFProc Natl Acad Sci U S A
December 2024
Department of Biology, Colorado State University, Fort Collins, CO 80523.
Eukaryotic nuclear genomes often encode distinct sets of translation machinery for function in the cytosol vs. organelles (mitochondria and plastids). This raises questions about why multiple translation systems are maintained even though they are capable of comparable functions and whether they evolve differently depending on the compartment where they operate.
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